Locus 5981

Sequence ID 3L_DroMel_CAF1
Location 15,987,768 – 15,987,888
Length 120
Max. P 0.867019
window9563

overview

Window 3

Location 15,987,768 – 15,987,888
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.75
Mean single sequence MFE -38.72
Consensus MFE -31.22
Energy contribution -31.66
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.97
Structure conservation index 0.81
SVM decision value 0.85
SVM RNA-class probability 0.867019
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15987768 120 + 23771897
UCUAUUGAAGCAGCGCUUCGGCGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUUCGCAAAAGCGAAUCAAUUUUAUGCUUGUGACGGGGUGUCGUUGAGGCGGGGGUA
.........((..(((((((((((((((.....))).......((((.((((..(((((((((.(((((....)))))..)))))))).)...)))).))))))))))))))))...)). ( -39.00)
>DroSec_CAF1 16763 120 + 1
UCUAUUGAAGCAGCGCUGCGGCGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUUCGCAAAAGCGAAUCAAUUUUAUGCUUGUGCCGGGGUGUCGUUGAGGCGGGGGUA
((..((..(((.(((((.(((((..(((.....((((((.....)))))).....((((((((.(((((....)))))..)))))))))))..))))).))))).)))..))..)).... ( -35.90)
>DroSim_CAF1 17908 120 + 1
UCUAUUGAAGCAGCGCUGCGGCGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUUCGCAAAAGCGAAUCAAUUUUAUGCUUGUGCCGGGGUGUUGUUGAGGCGGGGGUA
((..((..(((((((((.(((((..(((.....((((((.....)))))).....((((((((.(((((....)))))..)))))))))))..))))).)))))))))..))..)).... ( -39.70)
>DroEre_CAF1 17828 119 + 1
UCUAUUGAAGCUGAGCUGCGACGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUU-GCAAAAGCGAAUCAAUUUUAUGGCUGUGCCGGGGUGUCGUUGCGGCGGGGGUA
..........((..((((((((((((((.....)))........((((((((((.(((((((((((-((....)))))..)))))))).)))).))))))..)))))))))))..))... ( -44.30)
>DroYak_CAF1 17286 119 + 1
UCUAUUGAAGCAGAGCUGCGACGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUU-GCAAAAGCGAAUCAAUUUUAUGGUUGUGCCGGGGUGUCGUUGGGGCGGGGGUA
.........((...(((.((((((((((.....)))........(((((((((..(((((((((((-((....)))))..))))))))..))).))))))..))))))).)))....)). ( -34.70)
>consensus
UCUAUUGAAGCAGCGCUGCGGCGGCGGCGAACAGCUAAAAUCAAUUUGGUCAGUGAUAAAAUUUUUCGCAAAAGCGAAUCAAUUUUAUGCUUGUGCCGGGGUGUCGUUGAGGCGGGGGUA
.........((..((((.((((((((((.....)))........(((((((((..((((((((.(((((....)))))..))))))))..))).))))))..))))))).))))...)). (-31.22 = -31.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:54 2006