Locus 5980

Sequence ID 3L_DroMel_CAF1
Location 15,987,421 – 15,987,541
Length 120
Max. P 0.902116
window9562

overview

Window 2

Location 15,987,421 – 15,987,541
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.47
Mean single sequence MFE -38.04
Consensus MFE -35.67
Energy contribution -35.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.94
SVM decision value 1.02
SVM RNA-class probability 0.902116
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15987421 120 - 23771897
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCUACCAUCUACCAUCGACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((.........((((((....((((..(((.((((......)))).)))..))))....)))).))...((..(((((....))))).)).............))))))....... ( -39.10)
>DroSec_CAF1 16444 120 - 1
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCUACCAUCUACCAUCCACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((.........((((((....((((..(((.((((......)))).)))..))))....)))).))........((((....)))).................))))))....... ( -38.70)
>DroSim_CAF1 17615 120 - 1
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCUACCAUCUACCAUCCACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((.........((((((....((((..(((.((((......)))).)))..))))....)))).))........((((....)))).................))))))....... ( -38.70)
>DroEre_CAF1 17492 113 - 1
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCUA-------CCAUCCACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((.........(((.......((((..(((.((((......)))).)))..))))..-------...)))....((((....)))).................))))))....... ( -36.60)
>DroYak_CAF1 16950 113 - 1
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCCA-------CCAACCACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((((((((.............))))))...((((((...((...(.((((....)))-------))........((((....))))))...))))))......))))))....... ( -37.12)
>consensus
GGCGGCAGCAUCUCAGGAGAUUAUUGAUGCUCGCAUUGCUCAUACGCAGCGUGGCCAUCUACCAUCUACCAUCCACUUGGCGCUUGUGCCGUUCCAGCAAUUAAAACGCCGCCAGCACGC
((((((((((((.............))))))...((((((...(((..(((.(((((....................)))).).)))..)))...))))))......))))))....... (-35.67 = -35.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:53 2006