| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,718,865 – 1,718,967 |
| Length | 102 |
| Max. P | 0.617298 |
| Location | 1,718,865 – 1,718,967 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.07 |
| Mean single sequence MFE | -28.86 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.46 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1718865 102 - 23771897 AUGGACUGCUUAAGGUCCUGAAACUGGACCAGGGUGAGU--GCCACGAUCAGGGAUAGGAAGUAACCUGGGUCGGACAUC-UAGG-UACUUUCUAAUCUUCCUUGU .((((((((((..(((((.......))))).)))).)))--.)))....(((((((((((((((.(((((((.....)))-))))-)))))))))....)))))). ( -38.60) >DroSec_CAF1 794 98 - 1 AUGGACUGCUCAAGGUCCUGAAACUGGACCAGGGUGAGU--GCCAUGAUCAGUGAUAGAAAUUAACCUGGGUAGGUCAUCACAGG-UCAUCACU-----ACCUUGU .............(((((.......)))))(((((.(((--(..((((((.(((((.((.....((....))...))))))).))-))))))))-----))))).. ( -30.30) >DroSim_CAF1 764 97 - 1 AUGGGCUGCUCAAGGUCCUGAAACUGGACCAGGGUGAGU--GCCACGAUCAGUGAUGGAAA-GAACCUGGCUAGGUCUUCACAGG-UCAUCACU-----ACCUUGU ...(((.(((((.(((((.......)))))....)))))--)))((((..(((((((....-..(((((............))))-))))))))-----...)))) ( -33.00) >DroEre_CAF1 829 87 - 1 AUGGGCUGCUCAAGGUCCUCAAACUGGAGCAGGGUAAGUGGACCAGGGU--AUCAU---AACUAACA---GUCA-UUAUC-UGCG-UACUUC--------ACUUAU .....((((((.((.........)).)))))).(((((((((...((((--(....---.((.....---))..-.))))-)...-...)))--------)))))) ( -19.70) >DroYak_CAF1 694 87 - 1 AUGGCCUGCUGAAGGUCCUGAAACUGGACCAGGGUGAGU--ACCACGAUCAGUGAU----ACUUUCA---UUCA-UUAUC-UACAUUACUUU--------ACCCUU .............(((((.......)))))(((((((((--(....(((.(((((.----.......---.)))-)))))-.....))).))--------))))). ( -22.70) >consensus AUGGACUGCUCAAGGUCCUGAAACUGGACCAGGGUGAGU__GCCACGAUCAGUGAU_G_AACUAACCUGGGUCGGUCAUC_UAGG_UACUUACU______CCUUGU .(((...(((((.(((((.......)))))....)))))...)))............................................................. (-13.94 = -14.46 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:15 2006