Locus 5977

Sequence ID 3L_DroMel_CAF1
Location 15,985,236 – 15,985,345
Length 109
Max. P 0.552815
window9553

overview

Window 3

Location 15,985,236 – 15,985,345
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.41
Mean single sequence MFE -38.58
Consensus MFE -27.13
Energy contribution -29.50
Covariance contribution 2.37
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.70
SVM decision value 0.04
SVM RNA-class probability 0.552815
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15985236 109 - 23771897
GAAAUGAAUGAUUUGUUCAAUAAGCGUUCAGCUC-----------CAUAGGCCGCCAGAGAUGGCUGAAAUGGUUUCCACACUUGGCCAUGGGGCAACCACUUUCUGGUGGCACUCUCUC
((..((((((.(((((...)))))))))))..))-----------.....(((((((((((((((..(..(((...)))...)..))))).((....))...))))))))))........ ( -39.40)
>DroSec_CAF1 14509 120 - 1
GAAAUAAACGAUUUGUUCAAUAGGCGUUCAGCUCUAUGGUAGCUCCAUAGACCGCCAGAGAUGCCUGAAAUGGUUUCCACACUUGGCCAUGGGGCAACCACUUUCUGGUGGCACUCUCUC
......................((((....(.(((((((.....))))))))))))((((((((((...((((((.........)))))).))))).(((((....)))))...))))). ( -36.70)
>DroSim_CAF1 15325 120 - 1
GAAAUAACUGAUUUGUUCAAUAAGCGUUCAGCUCUAUGGUAGCUACAUAGACCGCCAGAGAUGCCUGAAAUGGUUUCCACACUUGGCCAUGGGGCAACCACUUUCUGGUGGCACUCUCUC
.......((((..((((.....)))).)))).((((((.......))))))(((((((((((((((...((((((.........)))))).))))).....))))))))))......... ( -36.20)
>DroEre_CAF1 15203 119 - 1
GG-AUGAAUGAUUGGCUUAAUACGCGGUCAGCUCCAUGGUUACUCCAUAGGCUGCCAGAGAUGGCUGAAAUGGUUUCCCCACUUGGCCAAGGGGCAACCACUUUCUGGUGGCACUCUCUC
((-(....((((((.(.......)))))))..)))((((.....))))..((..(((((((((((..(..(((.....))).)..))))..((....))..)))))))..))........ ( -41.00)
>DroYak_CAF1 14703 119 - 1
GG-AUGAAUGAUUUGUUUAAUAAGCGGUGAGCUCUAUGGUUACUCCAAAGGCCGCCAGAGAUGGCUGCAAUGGUUUCCCCACUUGGCCAAGGGGCAACCACUUUCUGGUGGCACUCUCUC
((-(..(((.((..(((((........)))))...)).)))..)))....(((((((((((((((((...(((.....)))..))))))..((....))..)))))))))))........ ( -39.60)
>consensus
GAAAUGAAUGAUUUGUUCAAUAAGCGUUCAGCUCUAUGGUAACUCCAUAGGCCGCCAGAGAUGGCUGAAAUGGUUUCCACACUUGGCCAUGGGGCAACCACUUUCUGGUGGCACUCUCUC
......................(((.....)))((((((.....))))))((((((((((((((((((..((.......)).)))))))..((....))..)))))))))))........ (-27.13 = -29.50 +   2.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:44 2006