Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,984,329 – 15,984,505 |
Length | 176 |
Max. P | 0.914087 |
Location | 15,984,329 – 15,984,425 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -18.87 |
Consensus MFE | -18.02 |
Energy contribution | -17.80 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.96 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15984329 96 - 23771897 GUCCAGUUCCUGGACCUCCUCGUCUCCUCCCUGCCUUUCCUU-----UUU-----UUCCAGCAUCCCCUCUGUUCUUAAUCAAGAAACGCAUCGGCGGCGUAUCAC ((((((...)))))).....((((.((....(((.((((.((-----..(-----(...((((.......))))...))..)))))).)))..)).))))...... ( -17.80) >DroEre_CAF1 14308 101 - 1 GUCCAGUUCCUGGACCUCCUCGCCUCCUCCCCCCGUCACCUUCUCCGUUU-----UUCCAGCAUCCCCUCUGUUCUUAAUCAAGAAACGCAGCGGCGGCGUAUCAC ((((((...)))))).....((((......................(((.-----....)))....((.((((((((....))))...)))).)).))))...... ( -20.10) >DroYak_CAF1 13813 106 - 1 GUCCAGUUCCUGGACCUCCUCGCCUCCUUUCCCCGUCACCUUCUUCACCUUCACCUUCCAGCAUCCCCUCUGUUCUUAAUCAAGAAACGCAGCGGCGGCGUAUCAC ((((((...)))))).....((((.((...............................(((........)))(((((....))))).......)).))))...... ( -18.70) >consensus GUCCAGUUCCUGGACCUCCUCGCCUCCUCCCCCCGUCACCUUCU_C_UUU_____UUCCAGCAUCCCCUCUGUUCUUAAUCAAGAAACGCAGCGGCGGCGUAUCAC ((((((...)))))).....((((.((...............................(((........)))(((((....))))).......)).))))...... (-18.02 = -17.80 + -0.22)
Location | 15,984,399 – 15,984,505 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -23.81 |
Energy contribution | -25.38 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.57 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15984399 106 + 23771897 GAGA----------CGAGGAGGUCCAGGAACUGGACUUGCAUUUAUUUGGCGGCAAGAAAUGCGCAUACCCGUUACCUGACCAGCAAUAGGGUAUGUUGCACUCCACAUGGAGCAA ..((----------((.((((((((((...))))))))((((((.((((....)))))))))).....)))))).........((((((.....)))))).((((....))))... ( -34.00) >DroSec_CAF1 13549 103 + 1 GAGAGAGGAGAGAG-------------GAACUGGACUUGCAUUUAUUUGGCGGCAAGAAAUGCGCAUACCCGUUACCUCGCCAGCAAUAGGGUAUGUUGCACUCCACAUAAAGAAG ......((((.(((-------------((((.((...(((((((.((((....)))))))))))....)).))).))))....((((((.....)))))).))))........... ( -30.50) >DroEre_CAF1 14383 104 + 1 GAGG----------CGAGGAGGUCCAGGAACUGGACUUGCAUUUAUUUGGCGGCAAGAAAUGUGCAUACCCGUUAGCUGUCCAGAAAUAGGGUAUGUUGUACUCCACGUGGA--AU ...(----------((.((((((((((...))))))..((((((.((((....))))))))))((((((((.....((....)).....))))))))....)))).)))...--.. ( -35.10) >DroYak_CAF1 13893 104 + 1 GAGG----------CGAGGAGGUCCAGGAACUGGACUUGCAUUUAUUUGGCGGCAAGAAAUGUACAUACCCGUUACCUGUCCAGAAAUAGGGUAUGUUGUACUCCACAGGGA--AU ....----------...((((((((((...))))))..((((((.((((....))))))))))((((((((.....((....)).....))))))))....)))).......--.. ( -30.50) >consensus GAGA__________CGAGGAGGUCCAGGAACUGGACUUGCAUUUAUUUGGCGGCAAGAAAUGCGCAUACCCGUUACCUGUCCAGAAAUAGGGUAUGUUGCACUCCACAUGGA__AU (((................((((((((...))))))))((((((.((((....))))))))))((((((((.....((....)).....))))))))....)))............ (-23.81 = -25.38 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:41 2006