Locus 5974

Sequence ID 3L_DroMel_CAF1
Location 15,983,895 – 15,984,015
Length 120
Max. P 0.879393
window9548

overview

Window 8

Location 15,983,895 – 15,984,015
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -26.90
Consensus MFE -26.20
Energy contribution -25.72
Covariance contribution -0.48
Combinations/Pair 1.05
Mean z-score -1.30
Structure conservation index 0.97
SVM decision value 0.91
SVM RNA-class probability 0.879393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15983895 120 - 23771897
UUACUCUUUCGAAAGUUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUUUGCUUUAAUCGAAAUGGUUUUGUUCCUACAUCCACCGCUCUCUUCGC
.......(((((.(((.(((((((((....)))))))))..))).)))))..(((..((..(.((((((((...((...((((.....))))..))......))))))))).)).))).. ( -26.70)
>DroSec_CAF1 13069 120 - 1
UUACUUUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUUUGCUUUAAUCGAAAUGGUUUUGUUCCUACAUCCACCGCUCUCUUCGC
..(((..(((((..((((((((((((....))))))))).....)))...)))))..))).(.((((((((...((...((((.....))))..))......)))))))))......... ( -26.40)
>DroSim_CAF1 13854 120 - 1
UUACUCUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUUUGCUUUAAUCGAAAUGGUUUUGUUCCUACAUCCACCGCUCUCUUCGC
....((..((.((.((((((((((((....)))))))))..))).)).))..)).......(.((((((((...((...((((.....))))..))......)))))))))......... ( -26.20)
>DroEre_CAF1 13878 120 - 1
UUACUUUUUCGGAAGAUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUCUGCUUUAAUCGAAAUGGUUUUGUUCUUACAUCCACCGCUCUCUUCAC
...........(((((.(((((((((....)))))))))......................(.((((((((...((...((((.....))))..))......)))))))))..))))).. ( -27.70)
>DroYak_CAF1 13406 120 - 1
UUACUCUUUCGGAAGAUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUUUGCUUUAAUCGAAAUGGUUUUGUUCUUACAUCCACCGCUCUUUUCAC
........((....)).(((((((((....)))))))))............((((..((..(.((((((((...((...((((.....))))..))......))))))))).)).)))). ( -27.50)
>consensus
UUACUCUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUUAUUAUUGGAUUGAAUUAGUUGUCGGUGGAUUUUGCUUUAAUCGAAAUGGUUUUGUUCCUACAUCCACCGCUCUCUUCGC
.......(((((((...(((((((((....)))))))))...)).))))).((((..((..(.((((((((...((...((((.....))))..))......))))))))).)).)))). (-26.20 = -25.72 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:39 2006