Locus 5972

Sequence ID 3L_DroMel_CAF1
Location 15,982,656 – 15,982,776
Length 120
Max. P 0.969654
window9538

overview

Window 8

Location 15,982,656 – 15,982,776
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.66
Mean single sequence MFE -30.92
Consensus MFE -26.12
Energy contribution -26.80
Covariance contribution 0.68
Combinations/Pair 1.03
Mean z-score -2.11
Structure conservation index 0.84
SVM decision value 1.65
SVM RNA-class probability 0.969654
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15982656 120 - 23771897
CCAUUUCGAGCAACUCGAAAUGUCAAAACACAUCCGCCACACACAUCGCGGCAUCAUAGCUACGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
.(((((((((...)))))))))......((..((((((((.(((.(((..((......))..)))((((....))))..........).)))))))...(((.....))))))..))... ( -32.50)
>DroSec_CAF1 11867 120 - 1
CCAUUUCGAGCAACUCGAAAUGUCAAAACACAUCCGCCACACACAUCGCGCCAUCAUAGCUCCGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
.(((((((((...)))))))))......((..((((.......(((((.(((((((..(((..((((((....)))).....))..))))))))))..)))))......))))..))... ( -30.92)
>DroSim_CAF1 12657 120 - 1
CCAUUUCGAGCAACUCGAAAUGUCAAAACACAUCCGCCACACACAUCGCGCCAUCAUAGCUCCGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
.(((((((((...)))))))))......((..((((.......(((((.(((((((..(((..((((((....)))).....))..))))))))))..)))))......))))..))... ( -30.92)
>DroEre_CAF1 12535 118 - 1
CCAUUUCGAGCAGCUCGAAAUGUCAAAACAC--CCGCCACACACAUCGAGCCAUCAUAGCUCCGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
(((((((.....((((((..(((........--.......)))..))))))((((((.((((((.((((....))))(.....).....))).))).))))))........))))))).. ( -29.66)
>DroYak_CAF1 12020 118 - 1
CCAUUUCGAGCAACUCCAAAUGUCAAAACAC--CCGCCACACACAUCGAGUCAUCAUAGCUGCGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
((((((((((...)))....(((((...((.--..(((((.......((....)).((((((.((((((....)))).....)).)))))))))))..)).))))).....))))))).. ( -30.60)
>consensus
CCAUUUCGAGCAACUCGAAAUGUCAAAACACAUCCGCCACACACAUCGCGCCAUCAUAGCUCCGAUUGAAUCCUCAAGAAUCUCACAGCUGGUGGCAAUGAUGACGAAUCGGAAAUGGAA
.(((((((((...)))))))))......((..((((.......(((((.(((((((..(((..((((((....)))).....))..))))))))))..)))))......))))..))... (-26.12 = -26.80 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:30 2006