Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,713,751 – 1,713,887 |
Length | 136 |
Max. P | 0.978286 |
Location | 1,713,751 – 1,713,848 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -18.45 |
Energy contribution | -19.52 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.86 |
Structure conservation index | 0.78 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1713751 97 + 23771897 AAGAAGUCGACGAAAGCGCAAAACUAAAGCCAAAGAAAGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGCC ...............(((((...((...(((.......)))............(....)))..((((((((((......)))))).)))).))))). ( -25.20) >DroSec_CAF1 13852 97 + 1 AAGAAGUCGACGAAAGCGCAAAACCAAAGCCAAAGAAAGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGCC ...............(((((..(((((.(((.......)))............(....)........((((((......))))))))))).))))). ( -25.30) >DroEre_CAF1 14372 82 + 1 --GAA---GACGAACGCGCGAAACCAAAGCCAAAUAAAGGCUACUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUU---------- --...---......(((((((......((((.......))))......)))))))...........(((((((......))))))).---------- ( -23.00) >DroYak_CAF1 14024 93 + 1 AAGAA---GACGAAAGCGCAAAACCAAAGCAAAAGAAAGGCCAUUAAAUUGUGCGAAAGAGAAACCAAAACAGGUUUAACUGUUCUUGGUGUGCGC- .....---.......(((((..((((((((.........((((......)).))...((..(((((......)))))..))))).))))).)))))- ( -21.40) >consensus AAGAA___GACGAAAGCGCAAAACCAAAGCCAAAGAAAGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGC_ ...............((((((.......(((.......))).......)))))).........((((((((((......)))))).))))....... (-18.45 = -19.52 + 1.06)
Location | 1,713,751 – 1,713,848 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -17.34 |
Energy contribution | -18.02 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -2.68 |
Structure conservation index | 0.74 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1713751 97 - 23771897 GGCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCUUUCUUUGGCUUUAGUUUUGCGCUUUCGUCGACUUCUU ((((...((((.((((((......))))))))))........((((.((((....((((.......))))..)))).))))....))))........ ( -26.60) >DroSec_CAF1 13852 97 - 1 GGCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCUUUCUUUGGCUUUGGUUUUGCGCUUUCGUCGACUUCUU ((((...((((.((((((......))))))))))........((((.((((....((((.......))))..)))).))))....))))........ ( -26.50) >DroEre_CAF1 14372 82 - 1 ----------AAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAGUAGCCUUUAUUUGGCUUUGGUUUCGCGCGUUCGUC---UUC-- ----------..((((((..(((((......)))))..))..(((..((((....((((.......))))..))))..))).))))...---...-- ( -18.50) >DroYak_CAF1 14024 93 - 1 -GCGCACACCAAGAACAGUUAAACCUGUUUUGGUUUCUCUUUCGCACAAUUUAAUGGCCUUUCUUUUGCUUUGGUUUUGCGCUUUCGUC---UUCUU -(((((.((((((((.((..(((((......)))))..)))))((.((......))))............)))))..))))).......---..... ( -21.70) >consensus _GCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCUUUCUUUGGCUUUGGUUUUGCGCUUUCGUC___UUCUU .......((((.((((((......))))))))))........((((.((((....((((.......))))..)))).))))................ (-17.34 = -18.02 + 0.69)
Location | 1,713,788 – 1,713,887 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -14.54 |
Energy contribution | -17.18 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.19 |
Structure conservation index | 0.59 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1713788 99 + 23771897 AGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGCCCGAUAAAAGCGCUAAUUGACACGCACACAAGUGCACUAC ((..((((....((((((........((((((((((......)))))).))))..((((.........)))).........))))))..))))..)).. ( -29.10) >DroPse_CAF1 16686 89 + 1 AGGCA-------CGCAAGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGAGUGCUC-GCUUAACAACGCUAAUUGACACGCACACAGGCACACA-- ((((.-------(....)...(((...(((((((((......)))))).)))....)))-))))..................((......)).....-- ( -21.50) >DroSec_CAF1 13889 99 + 1 AGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGCCCAAUAAAAGCGCUAAUUGACACGCACACAAGUGCACUAC ((..((((....((((((........((((((((((......)))))).))))..((((.........)))).........))))))..))))..)).. ( -29.10) >DroEre_CAF1 14404 82 + 1 AGGCUACUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUU--------------AAAAGCGCUAAUUGACACACACACAAGUGCAC--- ..((.(((....(((((....).......(((((((......))))))).--------------.................))))....)))))..--- ( -16.30) >DroYak_CAF1 14058 98 + 1 AGGCCAUUAAAUUGUGCGAAAGAGAAACCAAAACAGGUUUAACUGUUCUUGGUGUGCGC-CAAUAAAAGCGCUAAUUGACACGCACACAAGUGCACUAC ((..((((....((((((........((((((((((......))))).)))))..((((-........)))).........))))))..))))..)).. ( -27.20) >consensus AGGCCAUUAAAUUGUGCGAAAGAGAAACCAGAACAGGUUUAACUGUUCUUGGUGUGCGC_CAAUAAAAGCGCUAAUUGACACGCACACAAGUGCACUAC .............(((((.........(.(((((((......))))))).)(((((((.......................)))))))...)))))... (-14.54 = -17.18 + 2.64)
Location | 1,713,788 – 1,713,887 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -17.48 |
Energy contribution | -17.28 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.29 |
Mean z-score | -1.95 |
Structure conservation index | 0.66 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1713788 99 - 23771897 GUAGUGCACUUGUGUGCGUGUCAAUUAGCGCUUUUAUCGGGCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCU ..((.((.....((((((.........((((((.....))))))..((((.((((((......))))))))))........))))))........)))) ( -29.52) >DroPse_CAF1 16686 89 - 1 --UGUGUGCCUGUGUGCGUGUCAAUUAGCGUUGUUAAGC-GAGCACUCCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCUUGCG-------UGCCU --.(..(((..((((.(((..((((....))))....))-).)))).(((.((((((......)))))))))............)))-------..).. ( -23.80) >DroSec_CAF1 13889 99 - 1 GUAGUGCACUUGUGUGCGUGUCAAUUAGCGCUUUUAUUGGGCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCU ..((.((.....((((((.........((((((.....))))))..((((.((((((......))))))))))........))))))........)))) ( -30.22) >DroEre_CAF1 14404 82 - 1 ---GUGCACUUGUGUGUGUGUCAAUUAGCGCUUUU--------------AAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAGUAGCCU ---..(((((..(((((((((......))))....--------------.(((((((......)))))))............)))))....))).)).. ( -19.30) >DroYak_CAF1 14058 98 - 1 GUAGUGCACUUGUGUGCGUGUCAAUUAGCGCUUUUAUUG-GCGCACACCAAGAACAGUUAAACCUGUUUUGGUUUCUCUUUCGCACAAUUUAAUGGCCU ...((((.((((.(((.((((((((..........))))-)))).)))))))...((..(((((......)))))..))...))))............. ( -29.30) >consensus GUAGUGCACUUGUGUGCGUGUCAAUUAGCGCUUUUAUUG_GCGCACACCAAGAACAGUUAAACCUGUUCUGGUUUCUCUUUCGCACAAUUUAAUGGCCU ...((((........((((........))))................(((.((((((......)))))))))..........))))............. (-17.48 = -17.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006