Locus 5968

Sequence ID 3L_DroMel_CAF1
Location 15,979,944 – 15,980,064
Length 120
Max. P 0.964703
window9531

overview

Window 1

Location 15,979,944 – 15,980,064
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.87
Mean single sequence MFE -23.62
Consensus MFE -20.00
Energy contribution -20.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.85
SVM decision value 1.57
SVM RNA-class probability 0.964703
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15979944 120 - 23771897
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUACGAUUUUUAAAAAGGCAAAAGGCGGAGACAACAAACAAAAAACAAAGGCGAGCGAA
..........((((...........((((.(((...(((((...)))))....))).))))...((.(((((......((.....))(....)..............))))))).)))). ( -22.40)
>DroSec_CAF1 9099 120 - 1
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUACGAUUUUUAAAAAGGCAGCAGGCGGAGACAACAAACAAAAAACAAAGCCGAGCGAA
..........((((...........((((.(((...(((((...)))))....))).))))................(((.(....)(....).................)))..)))). ( -24.60)
>DroSim_CAF1 9786 120 - 1
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUACGAUUUUUAAAAAGGCAGCAGGCGGAGACAACAAACAAAAAACAAAGCCGAGCGAA
..........((((...........((((.(((...(((((...)))))....))).))))................(((.(....)(....).................)))..)))). ( -24.60)
>DroEre_CAF1 9383 111 - 1
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUAUGAUAUUAGG---------AGGCGGAGACAACAAACAAAAAACAAAAGCGAGCGAA
..........((((..........((((........))))..((((.(((((((((.(......).))))).))---------)).)))).....................))))..... ( -25.50)
>DroYak_CAF1 9291 113 - 1
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUAUGAUAUUAAGAG-------AGGCGGAGACAACAAACAAAAAACAAAACCGAGCGAA
..........((((..........((((........))))..((((.(((.(((((.(......).)))))....)-------)).)))).........................)))). ( -21.00)
>consensus
AGAAUUUAAAUCGCACAUAAUUAAGGCUCAAUAAAUAGCCGAUCCGGCUUCAAUAUGGGGCAUACGAUUUUUAAAAAGGCA__AGGCGGAGACAACAAACAAAAAACAAAGCCGAGCGAA
..........((((...........((((.(((...(((((...)))))....))).))))..........................(....)......................)))). (-20.00 = -20.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006