Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,978,178 – 15,978,298 |
Length | 120 |
Max. P | 0.994523 |
Location | 15,978,178 – 15,978,298 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -45.88 |
Consensus MFE | -46.04 |
Energy contribution | -45.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.03 |
Structure conservation index | 1.00 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15978178 120 - 23771897 AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00) >DroSec_CAF1 7333 120 - 1 AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00) >DroSim_CAF1 8010 120 - 1 AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00) >DroEre_CAF1 7662 120 - 1 AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -46.00) >DroYak_CAF1 7576 120 - 1 AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGGCUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... ( -45.40) >consensus AGCAGCAGGUGCACCAAGUCAAGUCGGCCGGGCUCAAAAGGUGCCGCUGAGCCUGAGCUAAUUUCAAAUUACACACUUCAUUCGCCCGGGGAACUGGGACAGCGACUUGGACUGCGAUUG ....((((.....(((((((((((..((((((((((...(....)..)))))))).))..))))...................((((((....))))).)...))))))).))))..... (-46.04 = -45.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:15 2006