Locus 5962

Sequence ID 3L_DroMel_CAF1
Location 15,977,164 – 15,977,279
Length 115
Max. P 0.571524
window9521

overview

Window 1

Location 15,977,164 – 15,977,279
Length 115
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -24.56
Consensus MFE -17.78
Energy contribution -17.96
Covariance contribution 0.19
Combinations/Pair 1.21
Mean z-score -1.51
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.571524
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15977164 115 - 23771897
UACUCGUGUAUCUACAUUAGCUGUAAAGUAAAAUAUCGUGUAGAAACUACAAAUGUUAGAAACCGU--UAUA-UUGGUAACAUUCAAUCGCUACAUUUUUGCGGCAA-CUCUUCGCACU
.....((((..........(((((((((.........((((((........((((((....((((.--....-.))))))))))......)))))))))))))))..-......)))). ( -21.31)
>DroSec_CAF1 6511 116 - 1
UACACGCGUAUCUACAUGAGCUGUAAAGUAAAAUAUCGUGUAGAAACUACAAAUGUUAGAAACCGU--UAUAAUUGGUAACAUUCAAUCGUUACAUUUUUGUGGCAA-CUCGUCGCACU
.....((((.((((((((((((....)))......))))))))).)).................((--(((((...(((((........)))))....)))))))..-......))... ( -25.30)
>DroSim_CAF1 7012 116 - 1
UACACGCGUAUCUACAUGAGCUGUAAAGUAAAAUAUUGUGUAGAAACUACAAGUGUUAGAAACCGU--UAUAUUUGGUAACAUUCAAUCGUUACAUUUUUGUGGCAA-CUUGUCGCACA
.....((((.((((((..((((....)))......)..)))))).)).((((((..........((--(((.....)))))........((((((....)))))).)-))))).))... ( -26.20)
>DroYak_CAF1 6469 119 - 1
AACACGUAUAUCUACAUGAAGUGUGAAGUACAAUAUCGUGUAGAAACUAAAAACGGUAUAAACCAUAUAAUAGAUGGUAUCUUUCUACCGUUACAUUUUUGCUGCAAAGUAUUCGCACU
..((.(((....))).)).(((((((......((((..(((((........(((((((.(((((((.......)))))....)).))))))).........)))))..))))))))))) ( -25.43)
>consensus
UACACGCGUAUCUACAUGAGCUGUAAAGUAAAAUAUCGUGUAGAAACUACAAAUGUUAGAAACCGU__UAUA_UUGGUAACAUUCAAUCGUUACAUUUUUGCGGCAA_CUCGUCGCACU
.....(((..(((((((((................))))))))).......((((((....((((.........)))))))))).....((((((....))))))........)))... (-17.78 = -17.96 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:13 2006