| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,970,706 – 15,970,811 |
| Length | 105 |
| Max. P | 0.701796 |
| Location | 15,970,706 – 15,970,811 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.80 |
| Mean single sequence MFE | -36.65 |
| Consensus MFE | -22.23 |
| Energy contribution | -23.02 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15970706 105 - 23771897 CCAACAGGCGGUUCAGCCGCUGGGCCGCCGUUUCCACAGGUUCCUC------------CUUCUUCUUCGUGGGCUUUUCGUCGUCCGAAGAGGAGUAUCCAUCGUCGUUUUUGGACU ((((..((((((((((...)))))))))).........((...(((------------((.((((.....((((........)))))))))))))...))..........))))... ( -37.20) >DroVir_CAF1 49010 117 - 1 CCAGCAAGCGAUUCAGGCGCUGUGCCGCUGUUUCUUUGGGUUUCUCUGCAGACUUACGCUGCUUCUUCGGCUGCUUCUCAUCAUCCGAAGAGGAGGCACCAUCAUCGUCCUUCGACU .((((.((((.......)))).....))))........(((.(((((((((.......)))).(((((((.((........)).)))))))))))).)))......(((....))). ( -33.20) >DroSec_CAF1 56 105 - 1 CCAACAGGCGGUUCAGUCGCUGGGCCGCCGUUUCCACGGGUUUCUC------------CUUCUUCUUCGUUGGCUUUUCGUCGUCCGAAGAGGAGUAUCCAUCGUCGUUUUUGGACU ((((..((((((((((...))))))))))........((((..(((------------(....((((((.((((.....))))..)))))))))).))))..........))))... ( -39.10) >DroEre_CAF1 171 105 - 1 CUAACAAGCGGUUCAGCCGCUGGGCCGCCGUUUCCGCAGGUUUCUC------------CUUCUUCUUUGUGGGCUUUUCGUCGUCUGAAGAGGAGUAUCCAUCGUCGUUUUUGGACU .......(((((((((...)))))))))..........((...(((------------((.((((...(..(((.....)))..).)))))))))...))...(((.......))). ( -30.80) >DroYak_CAF1 56 105 - 1 CCAACAGGCGGUUCAGCCGCUGGGCCGCCGUUUCCGCAGGUUUCUC------------CUUCUUCUUCGUGGGCUUUUCGUCGUCCGAAGAGGAGUAUCCAUCGUCUUUUUUGGACU ......((((((((((...)))))))))).........((...(((------------((.((((.....((((........)))))))))))))...))...((((.....)))). ( -38.30) >DroAna_CAF1 53 105 - 1 CCAGCAGCCGAUUUAAUCUCUGGGCUGCCGUCUCCACGGGCUUCUC------------CUUCUUUUUGGAUGGCUUCUCGUCAUCCGAUGAGGAGUAGCCGUCAUCCUUCUUGGACU ...((((((.(.........).))))))(((....)))((((.(((------------(((....(((((((((.....))))))))).)))))).))))....(((.....))).. ( -41.30) >consensus CCAACAGGCGGUUCAGCCGCUGGGCCGCCGUUUCCACAGGUUUCUC____________CUUCUUCUUCGUGGGCUUUUCGUCGUCCGAAGAGGAGUAUCCAUCGUCGUUUUUGGACU ((((..((((((((((...))))))))))..............................((((((((((..(((.....)))...))))))))))...............))))... (-22.23 = -23.02 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:09 2006