| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,964,958 – 15,965,067 |
| Length | 109 |
| Max. P | 0.966157 |
| Location | 15,964,958 – 15,965,067 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 92.14 |
| Mean single sequence MFE | -22.19 |
| Consensus MFE | -18.45 |
| Energy contribution | -18.01 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15964958 109 + 23771897 AAGAUAGAGGCAGCUUAAAAUUUAAGCCGCACCGAAGAAGACGGCAAACAAAGUUAAUGGCACGUGAUAUAAAUGGGCA-AGAAACAAGUGUCAAUGGCUACAGUAAAUA .........((.(((((.....))))).)).(((.......))).......(((((.((((((.((.............-.....)).)))))).))))).......... ( -19.17) >DroSec_CAF1 67648 109 + 1 AAGAUAGAGGCAGCUUAAAAUUUAAGCCGCGCCGAAGAAGAUGGCAAACAAAGUUAAUGGCACGUGAUAUAAAUGGGCA-AGAAACAAGUGUCAAUGGCAACAGUAAAUA .........((.(((((.....))))).))((((.......)))).......((((.((((((.((.............-.....)).)))))).))))........... ( -20.67) >DroSim_CAF1 66850 109 + 1 ACGAUAGAGGCAGCUUAAAAUUUAAGCCGCGCCGAAGAAGAUGGCAAACAAAGUUAAUGGCACGUGAUAUAAAUGGGCA-AGAAACAAGUGUCAAUGGCAACAGUAAAUA .........((.(((((.....))))).))((((.......)))).......((((.((((((.((.............-.....)).)))))).))))........... ( -20.67) >DroEre_CAF1 64037 109 + 1 AAGAUAGAGGCAGCUUAAAAGUAAAGCCGUGCCAAAGCAGAUGGCAAACAAACUUAAUGGCACGUGAUAUAUGUGGCCA-AAAAACAAGUGUCAAUGGCUACAGUAAAUA ........(((.(((....)))...)))((((((.......((.....)).......))))))........((((((((-....((....))...))))))))....... ( -25.34) >DroYak_CAF1 75062 110 + 1 AAGAUAGAGGCAGUUUAAAUUUUAAGCUGCGCCAAAGAAGAUGGCAAACAAAGUUAAUGGCACGUGAUAUAAAUGGGCAAAAAAACAAGUGUCAAUAACUACAGUAAAUA .........((((((((.....))))))))((((.......))))......(((((.((((((.((...................)).)))))).))))).......... ( -25.11) >consensus AAGAUAGAGGCAGCUUAAAAUUUAAGCCGCGCCGAAGAAGAUGGCAAACAAAGUUAAUGGCACGUGAUAUAAAUGGGCA_AGAAACAAGUGUCAAUGGCUACAGUAAAUA .........((.(((((.....))))).))((((.......)))).......((((.((((((.((...................)).)))))).))))........... (-18.45 = -18.01 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:05 2006