Locus 5952

Sequence ID 3L_DroMel_CAF1
Location 15,942,915 – 15,943,010
Length 95
Max. P 0.905305
window9509

overview

Window 9

Location 15,942,915 – 15,943,010
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 78.04
Mean single sequence MFE -15.86
Consensus MFE -10.54
Energy contribution -10.60
Covariance contribution 0.06
Combinations/Pair 1.19
Mean z-score -1.98
Structure conservation index 0.66
SVM decision value 1.04
SVM RNA-class probability 0.905305
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15942915 95 + 23771897
AAACAGGUUUAUCGGUGCACAGCAA-AAAAAAAAAAAAAAGGUUGGCUAAACUUAAAUUUGCAUUUCGAUAGGAAUGUUUGAGAAAUUUGAUAAAU
......(((((((((.((.((((..-...............))))))....(((((....(((((((....))))))))))))....))))))))) ( -17.43)
>DroSec_CAF1 44673 88 + 1
AAUCAGGUUUAUCGGUGCACAGCAA-AAAA-------AAAAGUUGACUAAAGUUAAAUUUGCAUUUCGAUAGGAAUGUUUGAGAAAUUUGAUAGAU
.(((((((((.((((..........-....-------.(((.(((((....))))).)))(((((((....))))))))))).))))))))).... ( -16.60)
>DroSim_CAF1 44727 87 + 1
AAUCAGGUUUAUCGGUGCACAGCAA-AAA--------AAAAGUUGACUAAAGUUAAAUUUGCAUUUCGAUAGGAGUGUUUGAGAAAUUUGAUAAAU
.(((((((((.((((.((((.((((-(..--------.....(((((....))))).)))))..(((....))))))))))).))))))))).... ( -18.80)
>DroYak_CAF1 42003 74 + 1
CAUCAGGUUUAUUGCUGCACAAAAAAAA----------------------AAUUAAAUAUGCAUUUCGAUAAGAAUGUUUAAGCAACUUGAUAAAA
.(((((((....((((............----------------------..........((((((......))))))...))))))))))).... ( -10.61)
>consensus
AAUCAGGUUUAUCGGUGCACAGCAA_AAA________AAAAGUUGACUAAAGUUAAAUUUGCAUUUCGAUAGGAAUGUUUGAGAAAUUUGAUAAAU
.(((((((((.(((((.....)).....................................(((((((....))))))).))).))))))))).... (-10.54 = -10.60 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:01 2006