Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,935,455 – 15,935,549 |
Length | 94 |
Max. P | 0.999308 |
Location | 15,935,455 – 15,935,549 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 69.86 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -15.35 |
Energy contribution | -14.11 |
Covariance contribution | -1.24 |
Combinations/Pair | 1.33 |
Mean z-score | -2.18 |
Structure conservation index | 0.63 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15935455 94 + 23771897 -CAACUAGAAAAUUAGUAUAGAUAAAAGUGAUAGCAUGAUAG----GUUAGAUGGUUAAAAAAACCC--GUAG------GCUAGGGUUUUGGUAAGCAUCGUCCUUG -..(((((....))))).......................((----(...((((.(((..(((((((--....------....)))))))..))).))))..))).. ( -22.00) >DroSec_CAF1 37212 95 + 1 ACAACUAGGAAAGAUGUAUAGAUAAAAUUGAUAGCAUGAUAG----GUUAGAUGGUUAAAAAAACCC--GAAC------GCUAGGGUUUUGGUAAGCAUCGUCCUUG ......((((.....................((((.......----))))((((.(((..(((((((--....------....)))))))..))).)))).)))).. ( -22.30) >DroEre_CAF1 34964 97 + 1 -CAACUAGGAGAGAUGUAUAGAUAAAAGUGAUAGCACGAUAGGGAGGCUAGAUGGUUAAAAAAACCC--UAAG------U-UAGGGUUUUGAUAAGCAUCGUCCUUA -.....((((.....................((((.(........)))))((((.(((..(((((((--((..------.-)))))))))..))).)))).)))).. ( -24.70) >DroYak_CAF1 34490 98 + 1 -CUACUAGGAGAGAUGUAUAGAUAAAAGUGAUAGCAUGAUAGGAAGGCUAGAUGGUUAAGAAAACCC--UUAG------UUUAGGGUUUUGGUAAGCAUCGUCCUUG -.....((((.....................((((...........))))((((.(((..(((((((--(...------...))))))))..))).)))).)))).. ( -24.50) >DroAna_CAF1 8249 94 + 1 -CAACUA------------AGAUUAAAAGGAUUGCGUGCCUGGGGGGCAAGGUGGUCAAUGAAUCGCCCGAGCAAUCGAACAAGCAAUUCAGCAAGCACCUUAUCCG -......------------.........((((...(((((((((..((..((((((......))))))(((....))).....))..)))))...))))...)))). ( -27.40) >consensus _CAACUAGGAAAGAUGUAUAGAUAAAAGUGAUAGCAUGAUAGG__GGCUAGAUGGUUAAAAAAACCC__GAAG______GCUAGGGUUUUGGUAAGCAUCGUCCUUG ...............................((((...........))))((((.(((..(((((((................)))))))..))).))))....... (-15.35 = -14.11 + -1.24)
Location | 15,935,455 – 15,935,549 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 69.86 |
Mean single sequence MFE | -20.16 |
Consensus MFE | -13.23 |
Energy contribution | -11.47 |
Covariance contribution | -1.76 |
Combinations/Pair | 1.50 |
Mean z-score | -2.73 |
Structure conservation index | 0.66 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15935455 94 - 23771897 CAAGGACGAUGCUUACCAAAACCCUAGC------CUAC--GGGUUUUUUUAACCAUCUAAC----CUAUCAUGCUAUCACUUUUAUCUAUACUAAUUUUCUAGUUG- ..(((..((((.(((..(((((((....------....--)))))))..))).))))...)----)).......................((((......))))..- ( -15.60) >DroSec_CAF1 37212 95 - 1 CAAGGACGAUGCUUACCAAAACCCUAGC------GUUC--GGGUUUUUUUAACCAUCUAAC----CUAUCAUGCUAUCAAUUUUAUCUAUACAUCUUUCCUAGUUGU ..(((..((((.(((..(((((((....------....--)))))))..))).))))...)----)).......................(((.((.....)).))) ( -15.40) >DroEre_CAF1 34964 97 - 1 UAAGGACGAUGCUUAUCAAAACCCUA-A------CUUA--GGGUUUUUUUAACCAUCUAGCCUCCCUAUCGUGCUAUCACUUUUAUCUAUACAUCUCUCCUAGUUG- ..((((.((((.(((..(((((((((-.------..))--)))))))..))).))))(((((........).)))).....................)))).....- ( -21.30) >DroYak_CAF1 34490 98 - 1 CAAGGACGAUGCUUACCAAAACCCUAAA------CUAA--GGGUUUUCUUAACCAUCUAGCCUUCCUAUCAUGCUAUCACUUUUAUCUAUACAUCUCUCCUAGUAG- ..((((.((((.(((..((((((((...------...)--)))))))..))).))))((((...........)))).....................)))).....- ( -19.40) >DroAna_CAF1 8249 94 - 1 CGGAUAAGGUGCUUGCUGAAUUGCUUGUUCGAUUGCUCGGGCGAUUCAUUGACCACCUUGCCCCCCAGGCACGCAAUCCUUUUAAUCU------------UAGUUG- .((((((((((.((..(((((((((((..(....)..)))))))))))..)).))))))(((.....))).....)))).........------------......- ( -29.10) >consensus CAAGGACGAUGCUUACCAAAACCCUAGA______CUUC__GGGUUUUUUUAACCAUCUAGCC__CCUAUCAUGCUAUCACUUUUAUCUAUACAUCUCUCCUAGUUG_ .......((((.(((..(((((((................)))))))..))).)))).................................................. (-13.23 = -11.47 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:00 2006