Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,712,847 – 1,712,967 |
Length | 120 |
Max. P | 0.697219 |
Location | 1,712,847 – 1,712,967 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -32.22 |
Energy contribution | -33.35 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.20 |
Mean z-score | -1.64 |
Structure conservation index | 0.79 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1712847 120 - 23771897 UCUGUUUAGGUUCCUUUAUGGAGCCGGGCUUUGUCGUCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGGAGGAGUGGCAGGGAGUGGCUGGGAUGAAACCUCCUGGGAUUUCUU ........((((((.....)))))).(((......)))(((((..(((((((((.(((....))).)))))))))....)))))(((((((..(..(((.......)))..).))))))) ( -40.30) >DroSec_CAF1 12853 117 - 1 UCUGUUCAGGUUUCUUUAUGGAGCCGGGCUUUGUCGUCGCCAUGAUUACUCAGCUUUACUGAUAAUGCUGGGUGGA---GUAGCAGGGAGUGACUGGGAUGCAACCUCGUGGGGUUUUUU ...((((.((((((.....))))))))))..((.((((.(((.(.((((((.((((((((.(......).))))))---))......))))))))))))))))((((....))))..... ( -34.20) >DroEre_CAF1 13282 117 - 1 UCUGUUCAGGUUCCUUUAUGGGGACUGGAUUUGUCCCCGCCGUGAUUACUCCGCCUUAUUGAUAAUACUGGGUGAA---GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGCUUCUU ...((((.(((((((....)))))))((.((..((((.((((...(..((((((.(((((.(......).))))).---)))).))..).)))).))))..)).)).....))))..... ( -38.70) >DroYak_CAF1 12994 117 - 1 CGUGUUCAGGUUCCUUUAUGGAGCCUGGCUUUGUCGCCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGAA---GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGUUUCUU .....(((((((((.....)))))))))((..(((((((((((..(((((((((.(((....))).))))))))).---)))))...).)))))..))..(((((((....))))))).. ( -50.10) >consensus UCUGUUCAGGUUCCUUUAUGGAGCCGGGCUUUGUCGCCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGAA___GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGUUUCUU .....(((((((((.....)))))))))((..(((((((((((..(((((((((.(((....))).)))))))))....))))).))...))))..))..(((((((....))))))).. (-32.22 = -33.35 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006