Locus 595

Sequence ID 3L_DroMel_CAF1
Location 1,712,847 – 1,712,967
Length 120
Max. P 0.697219
window905

overview

Window 5

Location 1,712,847 – 1,712,967
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.61
Mean single sequence MFE -40.83
Consensus MFE -32.22
Energy contribution -33.35
Covariance contribution 1.13
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.34
SVM RNA-class probability 0.697219
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1712847 120 - 23771897
UCUGUUUAGGUUCCUUUAUGGAGCCGGGCUUUGUCGUCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGGAGGAGUGGCAGGGAGUGGCUGGGAUGAAACCUCCUGGGAUUUCUU
........((((((.....)))))).(((......)))(((((..(((((((((.(((....))).)))))))))....)))))(((((((..(..(((.......)))..).))))))) ( -40.30)
>DroSec_CAF1 12853 117 - 1
UCUGUUCAGGUUUCUUUAUGGAGCCGGGCUUUGUCGUCGCCAUGAUUACUCAGCUUUACUGAUAAUGCUGGGUGGA---GUAGCAGGGAGUGACUGGGAUGCAACCUCGUGGGGUUUUUU
...((((.((((((.....))))))))))..((.((((.(((.(.((((((.((((((((.(......).))))))---))......))))))))))))))))((((....))))..... ( -34.20)
>DroEre_CAF1 13282 117 - 1
UCUGUUCAGGUUCCUUUAUGGGGACUGGAUUUGUCCCCGCCGUGAUUACUCCGCCUUAUUGAUAAUACUGGGUGAA---GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGCUUCUU
...((((.(((((((....)))))))((.((..((((.((((...(..((((((.(((((.(......).))))).---)))).))..).)))).))))..)).)).....))))..... ( -38.70)
>DroYak_CAF1 12994 117 - 1
CGUGUUCAGGUUCCUUUAUGGAGCCUGGCUUUGUCGCCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGAA---GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGUUUCUU
.....(((((((((.....)))))))))((..(((((((((((..(((((((((.(((....))).))))))))).---)))))...).)))))..))..(((((((....))))))).. ( -50.10)
>consensus
UCUGUUCAGGUUCCUUUAUGGAGCCGGGCUUUGUCGCCGCCAUGAUUACUCAGCUUUAUUGAUAAUGCUGGGUGAA___GUGGCAGGGAGUGGCUGGGAUGAAACCUCGUGGGGUUUCUU
.....(((((((((.....)))))))))((..(((((((((((..(((((((((.(((....))).)))))))))....))))).))...))))..))..(((((((....))))))).. (-32.22 = -33.35 +   1.13) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006