| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,924,112 – 15,924,209 |
| Length | 97 |
| Max. P | 0.725093 |
| Location | 15,924,112 – 15,924,209 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.58 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -12.32 |
| Energy contribution | -13.52 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15924112 97 + 23771897 CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCACGAGCUUUGG--------------------CCGCCAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUUUUUUCCU--AC .((((((((..(((((((.(((((.....(((((......)))))((((--------------------...))))..)))))...)))))))......))))))))........--.. ( -18.70) >DroVir_CAF1 5478 116 + 1 CAAA--AGCAGCAUCAACGAAAUCAAACUAGUUCCUGCAUGAGCUUUGAAAAAACAAAAGAAAAAAAAAACGAAAACCGGUUACGGCUUUUGUAGACGUUUCUUUUCUCU-CUCGUUUC ....--.........(((((..((((...(((((......)))))))))......((((((((......((((((.(((....))).)))))).....))))))))....-.))))).. ( -22.00) >DroSec_CAF1 25814 96 + 1 CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCACGAGCUUUGG--------------------AUGCCAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUUUUUUCCU--A- .((((((((..(((((((.(((((.....(((((......)))))((((--------------------...))))..)))))...)))))))......))))))))........--.- ( -18.70) >DroSim_CAF1 26129 97 + 1 CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCACGAGCUUUGG--------------------AUGCCAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUUUUUUCCU--AC .((((((((..(((((((.(((((.....(((((......)))))((((--------------------...))))..)))))...)))))))......))))))))........--.. ( -18.70) >DroEre_CAF1 23525 96 + 1 CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCUCGAGCUUUGG--------------------AUGCAAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUU-UUUCCU--AC .((((((((..(((((((....((((...(((((......)))))))))--------------------.......(((....))))))))))......)))))))).-......--.. ( -18.30) >DroYak_CAF1 24093 97 + 1 CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCACGAGCUUUGA--------------------AUGCAAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUUUUUUCCU--AC .((((((((..(((((((.(((((......((((......))))((((.--------------------...))))..)))))...)))))))......))))))))........--.. ( -17.10) >consensus CAACAAAAUAAACAAAAGAAAACCAAACUAGUUCCUCCACGAGCUUUGG____________________AUGCAAACCGGUUUCGGCUUUUGUACACCCGUUUUGUUUUUUUCCU__AC .((((((((..(((((((....((((...(((((......)))))))))...........................(((....))))))))))......))))))))............ (-12.32 = -13.52 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:51 2006