Locus 594

Sequence ID 3L_DroMel_CAF1
Location 1,712,523 – 1,712,629
Length 106
Max. P 0.757097
window904

overview

Window 4

Location 1,712,523 – 1,712,629
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 90.08
Mean single sequence MFE -25.78
Consensus MFE -18.45
Energy contribution -19.83
Covariance contribution 1.38
Combinations/Pair 1.19
Mean z-score -2.29
Structure conservation index 0.72
SVM decision value 0.49
SVM RNA-class probability 0.757097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1712523 106 - 23771897
UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCGGUUCUCUUCGCUGAAUCAAUCGAGAAAGCUUCUAGCUCUAUCCAAAUUCGGGCUAGAA
......................((((((((((((((((((.(((..........)))))))))..)))))))))))).((((((((...........)))))))). ( -30.30)
>DroSec_CAF1 12529 106 - 1
UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCGGUUCUCUUCGCUGAAUCAAUCGAGAAAGCUUCUAGCUCUAUCCGAAUUCGGGCUAGAA
....((((((............((((((((((((((((((.(((..........)))))))))..)))))))))))))))))).((((((((....)))).)))). ( -30.50)
>DroEre_CAF1 12955 105 - 1
UCCACUAGAAUAAUAUACACAUGUUUUCUUGGCUUUCAGCUGAAAUCCGUUCUAUUCUCUGAAUCAACCGUGG-AGCUUAUAGCUCCAUCCGAAUUCGGGCUAGAA
....((((......................((.((((....)))).)).........(((((((.....((((-(((.....)))))))....))))))))))).. ( -24.10)
>DroYak_CAF1 12664 105 - 1
UCCACUAGAAUAUUAUACAUAUGUUUUCUUGAUUUUCAGCUGCAAUCCGUUCUAUUCUCUGAAUCAACCGUGG-AGCUUUUGGCUCUUUCCGAAUUCGGGUUAGAA
(((((.(((((((.......))))))).(((((((..((..((.....))......))..)))))))..))))-)((.....))(((.((((....))))..))). ( -18.20)
>consensus
UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCCGUUCUAUUCGCUGAAUCAACCGAGA_AGCUUCUAGCUCUAUCCGAAUUCGGGCUAGAA
......................((((((((((((((((((.................))))))..)))))))))))).((((((((...........)))))))). (-18.45 = -19.83 +   1.38) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006