Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,712,523 – 1,712,629 |
Length | 106 |
Max. P | 0.757097 |
Location | 1,712,523 – 1,712,629 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -18.45 |
Energy contribution | -19.83 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.19 |
Mean z-score | -2.29 |
Structure conservation index | 0.72 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1712523 106 - 23771897 UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCGGUUCUCUUCGCUGAAUCAAUCGAGAAAGCUUCUAGCUCUAUCCAAAUUCGGGCUAGAA ......................((((((((((((((((((.(((..........)))))))))..)))))))))))).((((((((...........)))))))). ( -30.30) >DroSec_CAF1 12529 106 - 1 UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCGGUUCUCUUCGCUGAAUCAAUCGAGAAAGCUUCUAGCUCUAUCCGAAUUCGGGCUAGAA ....((((((............((((((((((((((((((.(((..........)))))))))..)))))))))))))))))).((((((((....)))).)))). ( -30.50) >DroEre_CAF1 12955 105 - 1 UCCACUAGAAUAAUAUACACAUGUUUUCUUGGCUUUCAGCUGAAAUCCGUUCUAUUCUCUGAAUCAACCGUGG-AGCUUAUAGCUCCAUCCGAAUUCGGGCUAGAA ....((((......................((.((((....)))).)).........(((((((.....((((-(((.....)))))))....))))))))))).. ( -24.10) >DroYak_CAF1 12664 105 - 1 UCCACUAGAAUAUUAUACAUAUGUUUUCUUGAUUUUCAGCUGCAAUCCGUUCUAUUCUCUGAAUCAACCGUGG-AGCUUUUGGCUCUUUCCGAAUUCGGGUUAGAA (((((.(((((((.......))))))).(((((((..((..((.....))......))..)))))))..))))-)((.....))(((.((((....))))..))). ( -18.20) >consensus UCCACUAGAAUAAUAUACACAUGUUUUCUUGGUUUUCAGCUGAAAUCCGUUCUAUUCGCUGAAUCAACCGAGA_AGCUUCUAGCUCUAUCCGAAUUCGGGCUAGAA ......................((((((((((((((((((.................))))))..)))))))))))).((((((((...........)))))))). (-18.45 = -19.83 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006