| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,918,208 – 15,918,327 |
| Length | 119 |
| Max. P | 0.634040 |
| Location | 15,918,208 – 15,918,327 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.60 |
| Mean single sequence MFE | -40.66 |
| Consensus MFE | -35.08 |
| Energy contribution | -35.80 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15918208 119 - 23771897 CCACGACUGUGCUGCCAACUGCGACGCUGACGUCGACGUCGAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAACCCAAGAAA- ....(((((.(((((...((((((((((((((....))))....((....)).))))..)))))).((((((((((..((.....)).))))))))))))))))))))...........- ( -42.10) >DroSec_CAF1 19918 114 - 1 CCACGACUGCGCUGCCAACUGCGA------CGUCGACGUCGAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAAACCAAGAAAA ....(((((.(((((...((((((------((....))))(((.(((......)))..))))))).((((((((((..((.....)).))))))))))))))))))))............ ( -37.70) >DroSim_CAF1 20196 113 - 1 CCACGACUGCGCUGCCAACUGCGA------CGUCGACGUCGAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAAACCAAGAAA- ....(((((.(((((...((((((------((....))))(((.(((......)))..))))))).((((((((((..((.....)).))))))))))))))))))))...........- ( -37.70) >DroEre_CAF1 17510 118 - 1 CCACGACUGCGCUGC-GACUGCGACGUUGACGUCGACGUCGAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAACCCAAGAAA- ....(((((.(((((-..(((((((((((....)))))))(((.(((......)))..))))))).((((((((((..((.....)).))))))))))))))))))))...........- ( -43.70) >DroYak_CAF1 17880 118 - 1 CCACGACUGCGCUGC-GACUGCGACGUCGGCGUCCACGUCAAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAACCCAAGAAA- ....(((((.(((((-..((((((.(((((((....))))....(((......)))))))))))).((((((((((..((.....)).))))))))))))))))))))...........- ( -42.10) >consensus CCACGACUGCGCUGCCAACUGCGACG__G_CGUCGACGUCGAGAGCUGUGGCAAGCGAUUCGCAGAUUUUACGUUUCAGUUUCGUGCAAAACGUGGAAGCGGCUGGUCAACCCAAGAAA_ ....(((((.(((((...((((((....((((....))))....(((......)))...)))))).((((((((((..((.....)).))))))))))))))))))))............ (-35.08 = -35.80 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:37 2006