Locus 5937

Sequence ID 3L_DroMel_CAF1
Location 15,917,193 – 15,917,312
Length 119
Max. P 0.747007
window9483

overview

Window 3

Location 15,917,193 – 15,917,312
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.57
Mean single sequence MFE -22.93
Consensus MFE -21.73
Energy contribution -21.41
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.16
Structure conservation index 0.95
SVM decision value 0.46
SVM RNA-class probability 0.747007
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15917193 119 - 23771897
AAAUCAUAAAUG-CUUGCUUUCCAAAAUAGAAACAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUAAGCUUUGAGUACUAUAAUUAGGCGAGCCGAUUUAAUUAGUACAAUUAGCAAAUUA
.(((((((((((-..(..((((((................))))))...)..))))).))))))..(((....((((((.((((.((....))))))....))))))....)))...... ( -21.69)
>DroSec_CAF1 18946 114 - 1
AAAUCAUAAAUGUCUUGCUUUCCAAA------ACAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUAAGCUGCGAGUACUAUAAUUAGGCGAGCCGAUUUAAUUAGUGCAAUUAGCAAAUUA
.(((((((((((..((..((((((..------........))))))..))..))))).))))))..((((...((((((.((((.((....))))))....))))))...))))...... ( -23.90)
>DroSim_CAF1 19209 120 - 1
AAAUCAUAAAUGCCUUGCUUUCCAAAAUAGAAACAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUAAGCUGCGAGUACUAUAAUUAGGCGAGCCGAUUUAAUUAGUGCAAUUAGCAAAUUA
.(((((((((((..((..((((((................))))))..))..))))).))))))..((((...((((((.((((.((....))))))....))))))...))))...... ( -22.59)
>DroEre_CAF1 16534 119 - 1
AAAUCAUAAAUG-CUUGCUUUCCAAAAUAGAAGCAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUGAGCUUUGAGUACUAUAAUUAGGCGAGCCAAUUUAAUUAGUGCAAUUAGCUAAUUA
.((((((....(-((((((((........))))))).....(((......)))))...)))))).((((....((((((.((((.((....))))))....))))))....))))..... ( -24.10)
>DroYak_CAF1 16899 119 - 1
AAAUCAUAAAUG-CUUGCUUUCCAAAAUAGAAACAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUAAGCUUUGAGUACUAUAAUUAGGCGAGCCGAUUUAAUUAGUGCAAUUAGCUAAUUA
.(((((((((((-..(..((((((................))))))...)..))))).)))))).((((....((((((.((((.((....))))))....))))))....))))..... ( -22.39)
>consensus
AAAUCAUAAAUG_CUUGCUUUCCAAAAUAGAAACAAAAUGUGGAGAUAAAUUCGUUUGAUGAUUAAGCUUUGAGUACUAUAAUUAGGCGAGCCGAUUUAAUUAGUGCAAUUAGCAAAUUA
.(((((((((((......((((((................))))))......))))).))))))..(((....((((((.((((.((....))))))....))))))....)))...... (-21.73 = -21.41 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:35 2006