Locus 5936

Sequence ID 3L_DroMel_CAF1
Location 15,916,452 – 15,916,572
Length 120
Max. P 0.889166
window9482

overview

Window 2

Location 15,916,452 – 15,916,572
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.79
Mean single sequence MFE -34.56
Consensus MFE -25.90
Energy contribution -26.98
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -2.29
Structure conservation index 0.75
SVM decision value 0.95
SVM RNA-class probability 0.889166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15916452 120 + 23771897
ACGAGUAUUUUCACUGGGAUCUGGUUGGUUUUCCCAAACUCACAUAAGGACGAUACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUACUUCCGUUGUCCUUGUGCUAGUUCCU
..(((....)))...((((.((((((((.....)))).....(((((((((((((((((((((......)))))))))......((((.......)))))))))))))))))))).)))) ( -34.80)
>DroSec_CAF1 18124 120 + 1
AUAAGUAUUUUCACUGGGAGUUGGUUGGUUUUCCCAAACUCACAUAAGGGCGAUACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUACUUCCGUUGUCCUUGUGCUAGUUCCU
............((((((((((...(((.....)))))))).(((((((((((((((((((((......)))))))))......((((.......))))))))))))))))))))).... ( -33.70)
>DroSim_CAF1 18371 120 + 1
AUGAGUAUUUUCACUGGGAGUUGGUUGGUUUUCCCAAACUCACAUAAGGGCGAUACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUACUUCCGUUGUCCUUGUGCUAGUUCCU
..(((....)))((((((((((...(((.....)))))))).(((((((((((((((((((((......)))))))))......((((.......))))))))))))))))))))).... ( -33.90)
>DroEre_CAF1 15834 113 + 1
ACGAGUAUUUUCUCUGGCAG------GGUUU-CCCGAACUCAAAUAAGGGCCAAACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUACUUCCGUUGUCCUUGUGCCAGUUCCU
.............(((((.(------(((((-...))))))..((((((((.(((((((((((......)))))))))))..((((((.......)))))).)))))))))))))..... ( -32.50)
>DroYak_CAF1 16000 114 + 1
ACGAGUAUUUUCUCUGGGAG------GGUUUUUCAGAACUCUCAUAAGGGCGAAACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUGCUUCCGUUGUCCUUGUGCUAGUUCCU
..(((......))).(((((------(((((....))))))))((((((((((((((((((((......)))))))))))).(((((((....)).))))).)))))))).......)). ( -37.90)
>consensus
ACGAGUAUUUUCACUGGGAG_UGGUUGGUUUUCCCAAACUCACAUAAGGGCGAUACAGAUUUAUGGUCUUGGAUUUGUUUUUAUGGAGCAAGUACUUCCGUUGUCCUUGUGCUAGUUCCU
..............((((((..........))))))((((..(((((((((((((((((((((......)))))))))......((((.......))))))))))))))))..))))... (-25.90 = -26.98 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:34 2006