Locus 5935

Sequence ID 3L_DroMel_CAF1
Location 15,914,995 – 15,915,115
Length 120
Max. P 0.724781
window9481

overview

Window 1

Location 15,914,995 – 15,915,115
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -25.76
Consensus MFE -23.20
Energy contribution -23.80
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.41
SVM RNA-class probability 0.724781
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15914995 120 + 23771897
ACGCCAACGCAUUAAAGUGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGAUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((..(((((....)))))...............((((((((..((.....))...(((..(((((((((....)))))))))...))).))))))))......)))........... ( -27.50)
>DroSec_CAF1 16652 120 + 1
ACGCCAACGCAUUAAAGUGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGAUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((..(((((....)))))...............((((((((..((.....))...(((..(((((((((....)))))))))...))).))))))))......)))........... ( -27.50)
>DroSim_CAF1 16887 120 + 1
ACGCCAACGCAUUAAAGGGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGAUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((..(((........)))...............((((((((..((.....))...(((..(((((((((....)))))))))...))).))))))))......)))........... ( -24.80)
>DroEre_CAF1 14431 120 + 1
ACGCCAACACAUUAAAGUGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGCUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((..(((......))).................((((((((((((..........)))).(((((((((....))))))))).......))))))))......)))........... ( -22.30)
>DroYak_CAF1 14552 120 + 1
ACGCCAGCACAUAAAAGUGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGCUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((.((((......))))................((((((((((((..........)))).(((((((((....))))))))).......))))))))......)))........... ( -26.70)
>consensus
ACGCCAACGCAUUAAAGUGCGGAAAUAUAAAUUAAAGUUGUCUAAGGCAAAGUGCAUGGAUUGUUUUGAGAAUAAUUUUUCAAAAAUUAUUGUAGACAAUCACUCGGGCUGUAAAUUAGC
..(((..(((((....)))))...............((((((((..((.....))........(((((((((....))))))))).......))))))))......)))........... (-23.20 = -23.80 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:33 2006