Locus 5934

Sequence ID 3L_DroMel_CAF1
Location 15,914,850 – 15,914,955
Length 105
Max. P 0.992429
window9480

overview

Window 0

Location 15,914,850 – 15,914,955
Length 105
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -18.68
Consensus MFE -17.96
Energy contribution -18.40
Covariance contribution 0.44
Combinations/Pair 1.17
Mean z-score -2.34
Structure conservation index 0.96
SVM decision value 2.33
SVM RNA-class probability 0.992429
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15914850 105 - 23771897
CGAACGCGUACGUAAAUAAUCCUGAGUGACAGUCGUUCAUAAAAUUAAUGUAUGCGUAAUAACAAUAAUAAUAAAAAA-------AAACAAAGCGAUUGCUUAAGGAAAUAU
...((((((((((.(((.....((((((.....))))))....))).)))))))))).....................-------.....((((....)))).......... ( -17.70)
>DroSec_CAF1 16500 112 - 1
CGAACGCGUACGUAAAUAAUCCUGAGUGACAGUCGUUCAUAAAAUUAAUGUAUGUGUAAUAAUAAUAAUACUAAAAAAAAAAACAAAACAAAGCGAUGGCUUAAGGAAAUAU
...((((((((((.(((.....((((((.....))))))....))).)))))))))).................................((((....)))).......... ( -16.30)
>DroEre_CAF1 14289 102 - 1
UGAACGCGUGCGUAAAUAAUCAUGCAUGACAGUCGUUCGUAAAAUGAAUGUAUGUGUAAUAAUAAUAA----------AAAAACAAAACAAAGCGUAAGCUUAAGGAAAUAU
......(((((((........)))))))(((..(((((((...)))))))..))).............----------............((((....)))).......... ( -18.50)
>DroYak_CAF1 14400 112 - 1
UGAUCGCGUACGUAAAUAAUCAUGAAUGACAGUCGUUCAUAAAAUUAAUGUAUGUGUAAUAAUAAUAAUACAAAAAAACAAAACAAAACAAAGCGAAAGCUUAAGGAAAUAU
....(((((((((.(((....(((((((.....)))))))...))).)))))))))..................................((((....)))).......... ( -22.20)
>consensus
CGAACGCGUACGUAAAUAAUCAUGAAUGACAGUCGUUCAUAAAAUUAAUGUAUGUGUAAUAAUAAUAAUACUAAAAAAAAAAACAAAACAAAGCGAAAGCUUAAGGAAAUAU
...((((((((((.(((....(((((((.....)))))))...))).)))))))))).................................((((....)))).......... (-17.96 = -18.40 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:32 2006