| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,914,261 – 15,914,447 |
| Length | 186 |
| Max. P | 0.828557 |
| Location | 15,914,261 – 15,914,380 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.28 |
| Mean single sequence MFE | -31.86 |
| Consensus MFE | -23.90 |
| Energy contribution | -26.42 |
| Covariance contribution | 2.52 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15914261 119 + 23771897 AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGACUACCGAGCAUCAAAAGGGUUUAUUGCCAAUUUCGGUGAAAGGGAAUAUAUUUGCAGAAAUGUAGA-AACAUCAAGC ..((((.(....((((.........))))..).)))).(((((...((...(((((((..(((.....)))..))).))))...)).......((((((....))))))-....))))). ( -27.70) >DroSec_CAF1 15975 120 + 1 AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGACUACCGAGCAUCGAAAGGGUUUAUUGCCAAUUUCGAUGAAAGGGAAUAUAUUUGCAGAAAUGUAAAAAACUUCAAGC ..((((.(....((((.........))))..).)))).(((((...((...((((((((.(((.....)))..))))))))...)).......((((((....)))))).....))))). ( -33.10) >DroSim_CAF1 16183 119 + 1 AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGACUACCGAGCAUCGAAAGGGUUUAUUGCCAAUUUCGGUGAAAGGGAAUAUAUUUGCAGAAAUGUAGA-AACGUCAAGC ..((((.(....((((.........))))..).)))).((((((..((...((((((((.(((.....)))..))))))))...)).......((((((....))))))-...)))))). ( -36.10) >DroEre_CAF1 13658 117 + 1 AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGGCUACCGAGCAGCGAAAGGGUUUAUUGCCAAUUUCGGUGAAAGGCAAUAUCUU--CGAAAAUGCAAA-AACGUCAGGC ..(((.......((((.........))))(((((.((((((.(((....)))..((((.((...(((((((..((((...)))))))))))))))--)).))))))...-.))))).))) ( -31.50) >DroYak_CAF1 13833 117 + 1 AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGACUACCGAGCAUCGAAAGGGUUUAUUGCCAGUUUCGGUGAAAGAGAAUAUUGU--CGAAAAUGUAAA-AACGGCAAGC ..(((.......((((((((...((((((.((...))...)))))).(...((((((((.(((.....)))..))))))))...)....))))))--)).....((...-.))))).... ( -30.90) >consensus AGGCCAAGAAGAUGACAAUAGAUUAGUCAGGCGUGGCAUUUGACUACCGAGCAUCGAAAGGGUUUAUUGCCAAUUUCGGUGAAAGGGAAUAUAUUUGCAGAAAUGUAAA_AACGUCAAGC ..((((.(....((((.........))))..).)))).((((((..((...((((((((.(((.....)))..))))))))...)).......((((((....))))))....)))))). (-23.90 = -26.42 + 2.52)
| Location | 15,914,341 – 15,914,447 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.98 |
| Mean single sequence MFE | -18.24 |
| Consensus MFE | -3.28 |
| Energy contribution | -3.48 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.18 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15914341 106 + 23771897 GAAAGGGAAUAUAUUUGCAGAAAUGUAGA-AACAUCAAGCUCAAGUGCAAAUAAGUACUAUACACAAUGGAUGAGAAAGUGAUGAAA-UCGUAAUAUAGUUCACACAA------------ ......((((...((((((....))))))-..(((((..(((((((((......)))))...(.....)..))))....)))))...-..........))))......------------ ( -20.70) >DroSec_CAF1 16055 105 + 1 GAAAGGGAAUAUAUUUGCAGAAAUGUAAAAAACUUCAAGCUCAAGUGAAAAUAAGUACUAAA--CAAAGGACGAGAAAGUGAUGUAA-UCGUAAUAUAGUUCACGAAA------------ ((....(((....((((((....))))))....)))....))..(((((.....((.....)--).....((((...(....)....-)))).......)))))....------------ ( -13.80) >DroSim_CAF1 16263 104 + 1 GAAAGGGAAUAUAUUUGCAGAAAUGUAGA-AACGUCAAGCUCAAGUGCAAAUAAGUACUAAA--CAAAGGAGGAGAAAGUGAUGUAA-UCGUAAUAUAGUUCACAUAA------------ ......((((...((((((....))))))-.((((((..(((.(((((......)))))...--(......))))....))))))..-..........))))......------------ ( -20.30) >DroEre_CAF1 13738 113 + 1 GAAAGGCAAUAUCUU--CGAAAAUGCAAA-AACGUCAGGCACAAGUGCAAAUAAGUACUAUU--CAAUGGAAGAGGAAGUGAAUUAAAUACGAGUAUACUGU--GUCCGACCUUGCCGAG ....(((((..((((--(.....(((...-........)))..(((((......)))))...--.....)))))(((((((.(((.......))).))))..--.)))....)))))... ( -21.40) >DroYak_CAF1 13913 101 + 1 GAAAGAGAAUAUUGU--CGAAAAUGUAAA-AACGGCAAGCACAAGUGCAAAUAAGUACUUUU--CAAUGGAGGAGGAAGAAAGUUAAAUACGAGUACACUGU--AUCA------------ ((.(.((....((((--((..........-..))))))......((((.........(((((--(....)))))).......((.....))..)))).)).)--.)).------------ ( -15.00) >consensus GAAAGGGAAUAUAUUUGCAGAAAUGUAAA_AACGUCAAGCUCAAGUGCAAAUAAGUACUAUA__CAAUGGAGGAGAAAGUGAUGUAA_UCGUAAUAUAGUUCACAUAA____________ ...........................................(((((......)))))............................................................. ( -3.28 = -3.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:31 2006