Locus 5931

Sequence ID 3L_DroMel_CAF1
Location 15,912,621 – 15,912,735
Length 114
Max. P 0.999817
window9472

overview

Window 2

Location 15,912,621 – 15,912,735
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -35.50
Consensus MFE -32.92
Energy contribution -33.72
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.81
Structure conservation index 0.93
SVM decision value 4.15
SVM RNA-class probability 0.999817
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15912621 114 - 23771897
CUUCUGCACGCCUUUGUCAUCCGGCACGGCAGGAUCCACAUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACA------AAAUUCCAUCAAACAACAGCAC
....((.(((((..(((((((..((..((......))................(((....)))..))(....)..)))))))..))))).))------...................... ( -31.00)
>DroSec_CAF1 14363 120 - 1
CUUCUGCACGCCUUUGUCAUCCGGCACGGGAGAAUCCACAUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACAAGAAGAAAAUUCCAUCAAACAACAGCAC
(((((..(((((..(((((((..((...((.....))................(((....)))..))(....)..)))))))..)))))...)))))....................... ( -36.70)
>DroSim_CAF1 14642 120 - 1
CUUCUGCACGCCUUUGUCAUCCGGCACGGCAGGAUCCACAUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACAAGAAGAAAAUUCCAUCAAACAACAGCAC
(((((..(((((..(((((((..((..((......))................(((....)))..))(....)..)))))))..)))))...)))))....................... ( -35.60)
>DroEre_CAF1 12066 120 - 1
CUUCUGCACGCCUUUGUCAUCCGGCACGGCAGGAUCCACGUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACAAGAAGAAAAUUCCAUCAAACAACAGCAC
(((((..(((((..(((((((.......((.........((((....))))..(((....)))..))(....)..)))))))..)))))...)))))....................... ( -38.60)
>DroYak_CAF1 12177 120 - 1
CUUCUGCACGCCUUUGUCAUCCGGCACGGCAGGAUCCACAUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACAAGAAGAAAAUUCCAUCAAACAACAGCAC
(((((..(((((..(((((((..((..((......))................(((....)))..))(....)..)))))))..)))))...)))))....................... ( -35.60)
>consensus
CUUCUGCACGCCUUUGUCAUCCGGCACGGCAGGAUCCACAUCAAAAUUGACAACCGGAAACGGAAGCGGCAACACGAUGACGUCGGCGUACAAGAAGAAAAUUCCAUCAAACAACAGCAC
((((((.(((((..(((((((..((..((......))................(((....)))..))(....)..)))))))..))))).)).))))....................... (-32.92 = -33.72 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:24 2006