| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,911,658 – 15,911,775 |
| Length | 117 |
| Max. P | 0.710950 |
| Location | 15,911,658 – 15,911,775 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -14.70 |
| Energy contribution | -15.86 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.710950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15911658 117 + 23771897 --CAUUUUUGACAGGAAUAAAAGAGAUUCCCACGAAUUUAGCCACAAAUGUUUGGCUAACUGCAA-ACGAAGCAGUCCAGACAGCAAGUGGAUAAUUGCUUUGAGGAAUCUUGGAAAUGU --(((((((.............((((((((((.(((((...((((...(((((((...(((((..-.....))))))))))))....))))..)))).)..)).))))))))))))))). ( -32.21) >DroSec_CAF1 13395 120 + 1 UCCAUUUUUGACAGGAAUAGAAGUGAUUCCCACGAAUUUAGCCAGAAAUUUUUGGCUUACUGCAAAACGAAGCAGUCCAGACAGCAAGUGGAUAAUUGCUUUGAGGAAUCUUGGAAAUGU ..((((((..(........((((..(((.((((......(((((((....))))))).(((((........)))))...........))))..)))..))))........)..)))))). ( -31.69) >DroSim_CAF1 13674 117 + 1 UCCAUUUUUGACAGGAACAGAAGUGAUUCCCACGAAUUUAGCCAGAAAUAUUUGGCUUACUGCAAAACGAAGCAACCCAGACAGCAAGUGGAUAAUUGCUUUGAGGAAUCUUGGAAA--- ((((((((((.......)))))))((((((...(.....(((((((....))))))).....)....((((((((.(((.........)))....)))))))).))))))..)))..--- ( -30.40) >DroEre_CAF1 11137 98 + 1 UUCAUUUUUGACAGAAAU---------AC-----------AAGUGGAAUGUUUGGCUUACUGCAA-ACGAAGCAGUCCAGACAGCAAGUGGCUAAUU-CUUUGAGGAAUCUUAGAAAUGU ..(((((((((.......---------.(-----------(..((...(((((((...(((((..-.....)))))))))))).))..))....(((-((....))))).))))))))). ( -23.50) >DroYak_CAF1 11187 110 + 1 UCCAUUUUUGACAGUGAU---------UCCCACGAAUUUUGUGAGAAAUUUUUGGCUUACUGCAA-ACGAAGCAGUCCAGACAGCAAGUGGAUAAUUGCUUCGAGAAAUGUUAGAAAUGU ..(((((((((((((((.---------..(((.(((((((....))))))).))).)))))....-.((((((((((((.........)))))...)))))))......)))))))))). ( -32.10) >consensus UCCAUUUUUGACAGGAAUA_AAG_GAUUCCCACGAAUUUAGCCAGAAAUGUUUGGCUUACUGCAA_ACGAAGCAGUCCAGACAGCAAGUGGAUAAUUGCUUUGAGGAAUCUUGGAAAUGU ..(((((((((.............................((((((....))))))...........((((((((((((.........)))...))))))))).......))))))))). (-14.70 = -15.86 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:23 2006