Locus 593

Sequence ID 3L_DroMel_CAF1
Location 1,711,322 – 1,711,416
Length 94
Max. P 0.790693
window903

overview

Window 3

Location 1,711,322 – 1,711,416
Length 94
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -29.81
Consensus MFE -17.09
Energy contribution -18.97
Covariance contribution 1.88
Combinations/Pair 1.19
Mean z-score -1.99
Structure conservation index 0.57
SVM decision value 0.59
SVM RNA-class probability 0.790693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1711322 94 - 23771897
AUCA----GUGUGCCUCAUCGUGUUGUUUCUGCUUGUCCAAUACUGGGCGCAGAUAAGGGCGAGGUAUG-AU-------------AAAUAUGAGGUGUGCCAAAAGUACACA
....----((((((....((((.((...(((((..(((((....))))))))))..)).))))(((((.-..-------------...........)))))....)))))). ( -30.74)
>DroSec_CAF1 11365 107 - 1
AUGA----GUGCGAAUCAUCGGGUUGUUUCUGCUUGUCCAAUACUGGACGCAGAUAAUGCCGAGAUAUG-AUACUAAAUUGCAGCAAAUAUGAGGUGUGCCACAAGUACACA
...(----(((((.(((.((((((((..(((((..(((((....)))))))))))))).))))))).))-.))))...................((((((.....)))))). ( -30.60)
>DroSim_CAF1 11461 102 - 1
AUCA----GUGCGAAUCAUCGGGUUGUUUCUGCUUGUCCAAUACUGGGCGCAGAUAAGGGCGAGAUAUG-AUA-----UUGCAGCAAACAUGAGGUGUGCCACAAGUACACA
....----.(((((((((((..(((.(((((((..(((((....)))))))))).)).)))..))..))-)).-----)))))...........((((((.....)))))). ( -30.00)
>DroEre_CAF1 11753 110 - 1
AUCAAAGGGUACGUCUCAUCGGGUUGUUUCUGUUUGUCCAAUACUGGGCACAGAUAAUGGUAACAUAUACAUAUU--UUUGCAGCAAACAUGAGGUGUGCCACAAUUACACA
.......(((((..(((((.(.(((((.(((((..(((((....))))))))))..(((....))).........--...)))))...))))))..)))))........... ( -32.10)
>DroYak_CAF1 11420 99 - 1
AUCA----GUACGUCUCAUCGGGU---UUAUGUUUGUCCAAUACUGCGCACAGAUAAGAGCCAGAUA----AAUG--UUUGCAGCAAACUUGAGGUGUGCCACAAUUACACA
....----((((..((((((.(((---((.((((((((((....)).).))))))).))))).))).----...(--((((...)))))..)))..))))............ ( -25.60)
>consensus
AUCA____GUGCGACUCAUCGGGUUGUUUCUGCUUGUCCAAUACUGGGCGCAGAUAAGGGCGAGAUAUG_AUA_____UUGCAGCAAACAUGAGGUGUGCCACAAGUACACA
........(((((((((((...(((((.(((((..(((((....))))))))))..........................)))))....)))))))))))............ (-17.09 = -18.97 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:06 2006