Locus 5928

Sequence ID 3L_DroMel_CAF1
Location 15,910,623 – 15,910,728
Length 105
Max. P 0.500000
window9467

overview

Window 7

Location 15,910,623 – 15,910,728
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -22.10
Consensus MFE -20.01
Energy contribution -20.45
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.26
Structure conservation index 0.91
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15910623 105 - 23771897
AUAUGUUUUAAGAAUCCAUUGUGGGAGCUAAUGGCUUUUAGCUGCCUACUUAAAAUCGCUUCUGGGAAUAUUGUAAUUUC---------------AUUUAGCAAUCACUUUUUCAUUGUU
..(((....(((........(((((((((((......)))))).)))))........(((....(((((......)))))---------------....))).....)))...))).... ( -21.10)
>DroSec_CAF1 12314 105 - 1
AUAUGUUUUUAGAAUCCAUUGUGGGAGCUAAUGGCUUUUAGCUGCCUGCUUAAAAUCGCUUCUGGGAAUAUUGUAAUUUC---------------AUUUAGCAAUCACUUUUUCAUUGUU
..((((((((((((.(.((((..((((((((......)))))).))..)....))).).)))))))))))).........---------------....((((((.........)))))) ( -21.00)
>DroSim_CAF1 12609 105 - 1
AAAUGUUUUUAGAAUCCAUUGUGGGAGCUAAUGGCUUUUAGCUGCCUACUUAAAAUCGCUUCUGGGAAUAUUGUAAUUUC---------------AUUUAGCAAUCACUUUUUCAUUGUU
.(((((((((((((.(.((((((((((((((......)))))).)))))....))).).)))))))))))))........---------------....((((((.........)))))) ( -23.50)
>DroYak_CAF1 10108 120 - 1
AUAUGUUUUAGGAAUCCAUUGUGGGAGCUAAUGGCUUUUAGCUGCCUACCUAAAAUCGUUUCUGCGAAUAUUGUAAUUUUGUUUUGUUUGUUUUUAGUUAGCAGUCACUUUUUCCUUGUU
.........(((((......(((((((((((......)))))).)))))((((((.((.....(((((.........)))))......)).))))))..............))))).... ( -22.80)
>consensus
AUAUGUUUUAAGAAUCCAUUGUGGGAGCUAAUGGCUUUUAGCUGCCUACUUAAAAUCGCUUCUGGGAAUAUUGUAAUUUC_______________AUUUAGCAAUCACUUUUUCAUUGUU
..((((((((((((.(.((((((((((((((......)))))).)))))....))).).))))))))))))............................((((((.........)))))) (-20.01 = -20.45 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:19 2006