Locus 5925

Sequence ID 3L_DroMel_CAF1
Location 15,909,681 – 15,909,797
Length 116
Max. P 0.913836
window9461

overview

Window 1

Location 15,909,681 – 15,909,797
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.29
Mean single sequence MFE -28.52
Consensus MFE -19.96
Energy contribution -20.64
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -3.25
Structure conservation index 0.70
SVM decision value 1.09
SVM RNA-class probability 0.913836
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15909681 116 + 23771897
CAGAACGUGAACAAAUAAAAACAUGUUUUGUUUGUUUCCCGAGAGGAAAACAAAAGUUAUACUGUUUUGUUUUC----GAAAAUUUGAAAACAUUUCUUGGGAAAUCUUCACUCAGAAAA
......((((((((((((((.....)))))))))((((((((((((((((((..........))))))((((((----((....)))))))).))))))))))))..)))))........ ( -32.80)
>DroSec_CAF1 11396 116 + 1
CAGAACGUGAACAAAUAAAAACAUGUUUUGUUUGUUUCCCUAGAGGAAAACAAAAGUUAUACUGUGCUGUUUUC----GAAAAUUUGAAAACAUUUCUUGGAAAAUCUUCACUCAGGAAA
(((((((((............)))))))))(((((((.((....)).))))))).............(((((((----((....)))))))))((((((((...........)))))))) ( -24.90)
>DroSim_CAF1 11661 116 + 1
CAGAACGUGAACAAAUAAAAACAUGUUUUGUUUGUUUCCCGAGAGGAAAACAAAAGUUAUACUGUGCUGUUUUC----GAAAAUUUGAAAACAUUUCUUGGGAAAUCUUCACUCACGAAA
.....(((((((((((((((.....))))))))))(((((((((((........(((........)))((((((----((....)))))))).)))))))))))........)))))... ( -33.70)
>DroEre_CAF1 9194 116 + 1
CAGAACGUGCACAAAUAAAAACAUGUUUUGUUUGUUUCCGAAAAGGAAAACAAAAGUUAUGCUGU--UGUUUUUUUUAUGAAAUUUGAAAACAUUUCUUGGGAAAUCUUCU--CGGGAAA
(((((((((............)))))))))..(((((.(((((((((((((((.((.....)).)--))))))))))......)))).)))))((((((((((.....)))--))))))) ( -27.40)
>DroYak_CAF1 9207 113 + 1
CAGAACGUGCACAAAUAAAAACAUGUUUUGUUUGUUUCCCAAAAGGAAAA-AAAAGUUAUACUGU--UGUUUUC----GAAAAUUGGAAAACAUUUCUUGGGAAAUCUUCUCUCACAAAA
(((((((((............)))))))))...((((((((...(((((.-...((.....))..--(((((((----........)))))))))))))))))))).............. ( -23.80)
>consensus
CAGAACGUGAACAAAUAAAAACAUGUUUUGUUUGUUUCCCAAGAGGAAAACAAAAGUUAUACUGU__UGUUUUC____GAAAAUUUGAAAACAUUUCUUGGGAAAUCUUCACUCAGGAAA
(((((((((............)))))))))...(((((((((((((........((.....))....(((((((............)))))))))))))))))))).............. (-19.96 = -20.64 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:13 2006