Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,908,924 – 15,909,040 |
Length | 116 |
Max. P | 0.779686 |
Location | 15,908,924 – 15,909,040 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -24.58 |
Energy contribution | -24.90 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.68 |
Structure conservation index | 0.79 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15908924 116 + 23771897 AGUUGAUAUAUUGGCUGCGGAGACCUGAGGGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUUGUUCUACUUAGUCAAA----AAAGUGGGCCACCGAACAAAAUUUAU (((..(....)..)))((((((((((...(....)...))))).....(((........)))...))))).(((((((.((((.......----.))))((....)))))))))...... ( -33.70) >DroSec_CAF1 8402 118 + 1 AGUUGAUAUAUUGGCUGCGGAGACCUGAGAGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUACUACUUAGUCAAAA--AAAAGUGGGCCACCGAACAAAAUUUAU ..........((((.(((((((((((............))))).....(((........)))...)))))).((((.((((((........--..))))))))))))))........... ( -29.10) >DroSim_CAF1 10906 120 + 1 AGUUGAUAUAUUGGCUGUGGAGACCUAAGAGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUACUACUUAGUCAAAAAAAAAAGUGGGCCACCGAACAAAAUUUAU ..........((((.(((((((((((............))))).....(((........)))...)))))).((((.((((((............))))))))))))))........... ( -26.10) >DroEre_CAF1 8445 115 + 1 AGUUGAUAUAUUAGCUGCGAAGACCUGAGGGAAACAUAAGGUCAGCACCUCCAUUGUCAGAGAUUUCCGCAUUGGCUC-ACUUAGCCGGG----AAAUUGGGCCACCGAACAAAAUGUAU ..((((((....((.(((...(((((...(....)...))))).))).))....)))))).(((((((....(((((.-....)))))))----)))))((....))............. ( -31.90) >DroYak_CAF1 8446 116 + 1 AGUUGAUAUAUUAGCUGUGGAGACCUGAGGGAAACAUAGGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGCUCUACUUAGUCGAA----AAAGUGGGCCACCGAACAAAAUUUAU ((((((....))))))((((((((((...(....)...))))).....(((........)))...)))))..((((.((((((.......----.))))))))))............... ( -34.30) >consensus AGUUGAUAUAUUGGCUGCGGAGACCUGAGGGAAACAUAAGGUCAGCACCUCAAUUGUCAGAGAUUUCCGCAUUGGUUCUACUUAGUCAAA____AAAGUGGGCCACCGAACAAAAUUUAU ((((((....))))))((((((((((...(....)...))))).....(((........)))...)))))..((((.((((((............))))))))))............... (-24.58 = -24.90 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006