Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,710,433 – 1,710,547 |
Length | 114 |
Max. P | 0.958171 |
Location | 1,710,433 – 1,710,547 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.84 |
Mean single sequence MFE | -37.78 |
Consensus MFE | -15.08 |
Energy contribution | -16.64 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.27 |
Mean z-score | -2.42 |
Structure conservation index | 0.40 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1710433 114 - 23771897 GUAAUGGAUGAG-AAUGACUGCGGCGGUCUUAUCAUCCACCCUUAUCACUUGUAAAAUCUUGAGCAAAGUCGAGGGGUAUGCCAAAUGGUUA-UCUCUUUC----UACUUUAGGUUAUAU ....(((((((.-...(((((...)))))...)))))))............(((.(((((.(((...((..((((((((.(((....)))))-)))))).)----).))).))))).))) ( -29.00) >DroSec_CAF1 10462 114 - 1 GGGUUGGAGGGGAAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUGGUUA-UCUCUGUC----UACUUAAAUUUAUAU ((((.(((.(((((.((((...)))))))))....)))))))..(((((((((((((((((((......)))))))))-)).))))))))..-........----............... ( -38.20) >DroSim_CAF1 10562 115 - 1 GGGUUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUGGUUAGUCUCUGUC----UACUUAAAUUUAUCU ((((.(((..(((((((((...)))))))))....)))))))..(((((((((((((((((((......)))))))))-)).))))))))...........----............... ( -42.30) >DroEre_CAF1 10846 118 - 1 GGGAUGGAGGGGUAAUGCCUGCGGUUCACUUAUCGCCUGGCGUUAUCACUUGUAAUCCCUUGAUAACGAUUGAAGGAC-UGCAAAGGGGUAA-UCUCUGCCAUCCCAUAUCAUCUCAUAU (((((((((((((.(((((.(((((......)))))..)))))((((..(((((.(((.(..((....))..).))).-)))))...)))))-))))).))))))).............. ( -43.70) >DroYak_CAF1 10485 114 - 1 GGGAUGAAGGGUGAAUGCCUGGGUUGUUCUUAUCGCCCGGCGUUAUCACUUGUAAUCUCGUGAGCAAAGUCGAGGGGU-UGCUAAGUGUUUA-UCUCUGUC----UACUUUAAGUUUUAU ((((((((.....((((((.((((.((....)).))))))))))..(((((((((((((.(((......))).)))))-))).)))))))))-))))....----............... ( -35.70) >consensus GGGAUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU_UGCCAAGUGGUUA_UCUCUGUC____UACUUAAAGUUAUAU (((.(((..((..((((((...))))))))..))))))......(((((((((((((((((((......))))))))).))).))))))).............................. (-15.08 = -16.64 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:05 2006