Locus 5919

Sequence ID 3L_DroMel_CAF1
Location 15,905,184 – 15,905,304
Length 120
Max. P 0.568984
window9448

overview

Window 8

Location 15,905,184 – 15,905,304
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.03
Mean single sequence MFE -24.16
Consensus MFE -16.00
Energy contribution -15.12
Covariance contribution -0.88
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.568984
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15905184 120 - 23771897
CAUUGGAUGUAGAUAUAUGUAUCUGAUUGAUUUAUUUCGUUUGGCAUGAAUUAAAUAUUUAUUUUCCGCUUAGCCAAGUUAUUAAUUUUGAAUGCCAAGGCAAUUGCUAAGCAUUUAUCU
....(((..((((((....)))))).(((((((((.((....)).)))))))))..........)))(((((((((((........))))..(((....)))...)))))))........ ( -26.30)
>DroSec_CAF1 4603 116 - 1
CAUUGGAUGUAGUUAU----AUCUGAUUGAUUUAUUUCGUUUGGCAUGAAUUAAAUAUUUAUUUUCCGCUUAGCCAAGUUAUUAAUUUUGAAUGCCAAGGCAAUUGCUAGGCAUUUUUCU
.((..(((((....))----)))..))..(((((.(((((.....))))).)))))...........(((((((((((........))))..(((....)))...)))))))........ ( -24.50)
>DroSim_CAF1 6805 116 - 1
CAUUGGAUGUAGUUAU----AUCUGAUUGAUUUAUUUCGUUUGGCAUGAAUUAAAUAUUUAUUUUCCGCUUAGCCAAGUUAUUAAUUUUGAAUGCCAAGGCAAUGGCUAAGCAUUUAUCU
.((..(((((....))----)))..))..(((((.(((((.....))))).)))))...........(((((((((..(((.......))).(((....))).)))))))))........ ( -27.50)
>DroEre_CAF1 4453 115 - 1
CAUUGGAUGUAGUUAU----AUCUGAUUGAUUUAUUUCGCCUGGCAUGAAUUAAAUAUUUAUUCUUCGUUUAGUCAAGUU-UUUAAUUUGAAUGCCAAGGCAAUUGCUAAGCAUUUAUCU
.((..(((((....))----)))..))...........(((((((((((((((((.((((...((......))..)))).-))))))))..))))).))))...(((...)))....... ( -24.50)
>DroYak_CAF1 4590 102 - 1
CAUUGGA-AUAACUAC----AUCCAAU-------------CCGGCAUGAAUUUAAUAUUUAUUCCUUGCUUAGUCAAGUUAUUUAUUUUGAAUGCCAAGGCAAUUGCAAAGCAUUUAUCU
.((((((-........----.))))))-------------..((.((((((.....)))))).)).(((((..(((((........))))).(((....)))......)))))....... ( -18.00)
>consensus
CAUUGGAUGUAGUUAU____AUCUGAUUGAUUUAUUUCGUUUGGCAUGAAUUAAAUAUUUAUUUUCCGCUUAGCCAAGUUAUUAAUUUUGAAUGCCAAGGCAAUUGCUAAGCAUUUAUCU
.(((((((............)))))))...............((.((((((.....))))))...))(((((((((((........))))..(((....)))...)))))))........ (-16.00 = -15.12 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:00 2006