Locus 5914

Sequence ID 3L_DroMel_CAF1
Location 15,883,720 – 15,883,822
Length 102
Max. P 0.627266
window9425

overview

Window 5

Location 15,883,720 – 15,883,822
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 90.10
Mean single sequence MFE -25.82
Consensus MFE -23.60
Energy contribution -23.60
Covariance contribution -0.00
Combinations/Pair 1.05
Mean z-score -1.37
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.627266
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15883720 102 + 23771897
GUCACCCCUCCACGGAUACCUCGGAUAUCCCCCAUCACCUUGCCCGUGGGGCAAACAAUCCGGACUUCUGAAUCCACAAUCCGGGGAACAAGAUCUCAGGAC
........(((..((((.((((((((...((((((..........))))))..........(((........)))...))))))))......))))..))). ( -26.40)
>DroSec_CAF1 28807 102 + 1
GUCACCCCACCACGGAUACCUCGGAUAUCCCCCAUCACCUUGCCCGUGGGGCAAACAAUCCGGACUCCUGAAUCCACAAUCCGGGGAACAAGAUCUCAGGAC
......((.....))...(((.((((.(((((.......((((((...)))))).......(((........))).......))))).....)))).))).. ( -25.90)
>DroEre_CAF1 21997 96 + 1
GCCACCCCUCCA-----ACCUCGGAUAUCCUCU-CAACCUUGCCCGUGGGGCAAACAAUCCGGACUGCUGAAUCCACAAUCCGGGGAACAAGAUCUCAGGAC
............-----.(((.((((.(((...-.....((((((...)))))).....(((((.((.((....)))).)))))))).....)))).))).. ( -26.20)
>DroYak_CAF1 31917 95 + 1
GCCACCCCUCCA-----ACCUCCGAUAUCCUCG-C-CCCUUGCCCGUGGGGCAAACAAUCCGGACUCCUGAAUCCACAAUCCGGGGAACAAGAUCUCAGGAC
............-----.(((..(((.(((..(-(-(((........))))).......(((((....((....))...)))))))).....)))..))).. ( -24.80)
>consensus
GCCACCCCUCCA_____ACCUCGGAUAUCCCCC_CCACCUUGCCCGUGGGGCAAACAAUCCGGACUCCUGAAUCCACAAUCCGGGGAACAAGAUCUCAGGAC
..................(((.((((.(((((.......((((((...)))))).......(((........))).......))))).....)))).))).. (-23.60 = -23.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006