Locus 5913

Sequence ID 3L_DroMel_CAF1
Location 15,882,249 – 15,882,351
Length 102
Max. P 0.701667
window9424

overview

Window 4

Location 15,882,249 – 15,882,351
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -29.76
Consensus MFE -17.00
Energy contribution -17.53
Covariance contribution 0.53
Combinations/Pair 1.23
Mean z-score -1.80
Structure conservation index 0.57
SVM decision value 0.35
SVM RNA-class probability 0.701667
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15882249 102 - 23771897
UUU-U-----------------UCUGGCUUGCUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCCCGAUUUGCAAGUAAGCUGCUUAACAUCACCCCCACCACGCUGGUC
...-.-----------------.(..((..(((((....)))....))(((.((((.(((((((((((((.((........)).)))))))))))))..))))....)))...))..).. ( -27.40)
>DroPse_CAF1 12061 116 - 1
GGCCAGCUGACAGUUGACUGCUGCCUGCUGCCUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCCCGAUUUGCAAGUAAGCUGCUUAGCAGGGGC----CCAUUCUGGCC
((((((.((.((((.....))))...(((.(((((....((.....)).........(((((((((((((.((........)).)))))))))))))))))))))----.))..)))))) ( -42.30)
>DroSec_CAF1 27398 103 - 1
UUUCA-----------------UCUGGCUUGCUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCCCGAUUUGCAAGUAAGCUGCUUAACAUCACCCCCACCAUGCUGGUC
.....-----------------...((((.(((((....)))...((.(((.((((.(((((((((((((.((........)).)))))))))))))..))))....))))).)).)))) ( -27.20)
>DroEre_CAF1 20397 101 - 1
UUU-------------------UCUGGGUUCUUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCACGAUUUGCGAGUAAGCUGCUUAGCAUCUCCGCUUCCACGCUGGUC
...-------------------..(((((...(((....)))....))(((..(((((((((((((((((.((........)).)))))))))))))).)))..)))..)))........ ( -31.20)
>DroYak_CAF1 30449 101 - 1
UUU-------------------UCUGGUUUGCUUCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCAAGCUUUGCAAGUAAGUAGCUUUACAUCGGCCCCUCCACACUGGAU
...-------------------((..((.(((((..((((((....((..(((......)))((((....))))..))..)))))).)))))(((.......)))........))..)). ( -21.20)
>DroAna_CAF1 11070 98 - 1
----------------------UCUGGUUUGCUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCCCGAUUUACAAGUAAGCCGCUUAACAUUGCCCGCACCAGGCUGCCC
----------------------((((((....(((....)))....(((.((.....(((((((((((((..............))))))))))))).....)).)))))))))...... ( -29.24)
>consensus
UUU___________________UCUGGCUUGCUGCUUUUGCAUUUUGCGUGUUGAUCUAAGCGGUUUAUUAGCCCCGAUUUGCAAGUAAGCUGCUUAACAUCGCCCCCACCACGCUGGUC
.......................(((((...........((.....))((((.....(((((((((((((.((........)).)))))))))))))))))............))))).. (-17.00 = -17.53 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:37 2006