Locus 5911

Sequence ID 3L_DroMel_CAF1
Location 15,877,964 – 15,878,056
Length 92
Max. P 0.989494
window9421

overview

Window 1

Location 15,877,964 – 15,878,056
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 77.20
Mean single sequence MFE -24.10
Consensus MFE -14.02
Energy contribution -14.13
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.83
Structure conservation index 0.58
SVM decision value 2.17
SVM RNA-class probability 0.989494
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15877964 92 + 23771897
GCAACAACAAUUGCUCAACGGGGCGUGUUGGCAUAAAAA-GCGAGCAUAAAACUUGGCCAACGCCGACUGCCUGAAAGAUGGCCAAGAACAAA
((..(((((...((((....)))).)))))((.......-))..))......((((((((.(..((......))...).))))))))...... ( -25.70)
>DroPse_CAF1 7993 75 + 1
--------AAAAGCUCAACAGCGCGUGGUGGCAUAAAAAGGCCAGCAUAGAACUUGGCCAACUGC----------GGAAUGGCUAAAAACAAA
--------....(((....)))..(((.((((........)))).))).....(((((((.....----------....)))))))....... ( -18.60)
>DroSec_CAF1 23003 92 + 1
GCAACAACAAUUGCUCAACGGGGCGUGUUGGCAUAAAAA-GCGAGCAUAAAACUUGGCCAACGCCGACUGCCAGCAAGAUGGCCAAGAACAAA
((..(((((...((((....)))).)))))((.......-))..))......((((((((..((.(.....).))....))))))))...... ( -26.70)
>DroYak_CAF1 26018 92 + 1
GCAACAACAAUUGCUCGACGGGGCGUGUUGGCAUAAAAA-GCGAGCAUAAAACUUGGCCAACGCAGACUGCCUGAAAGAUGGCCAAGAACAAA
((..(((((...((((....)))).)))))((.......-))..))......((((((((.(.(((.....)))...).))))))))...... ( -30.20)
>DroAna_CAF1 7187 81 + 1
CCAACAACAAGUGCUCAACGGUGCGUGGUGGCAUAAAAA-GCGAGCAUAAAACUUGGCCAACUACGA-----------AUGGCCAAGAACAAA
..........((((((....((((......)))).....-..))))))....((((((((.......-----------.))))))))...... ( -24.80)
>DroPer_CAF1 8007 75 + 1
--------AAAAGCUCAACAGCGCGUGGUGGCAUAAAAAGGCCAGCAUAGAACUUGGCCAACUGC----------GGAAUGGCUAAAAACAAA
--------....(((....)))..(((.((((........)))).))).....(((((((.....----------....)))))))....... ( -18.60)
>consensus
GCAACAACAAUUGCUCAACGGGGCGUGGUGGCAUAAAAA_GCGAGCAUAAAACUUGGCCAACGCCGA________AAGAUGGCCAAGAACAAA
............((........))(((.(.((........)).).)))....((((((((...................))))))))...... (-14.02 = -14.13 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:34 2006