Locus 5910

Sequence ID 3L_DroMel_CAF1
Location 15,876,388 – 15,876,501
Length 113
Max. P 0.583204
window9420

overview

Window 0

Location 15,876,388 – 15,876,501
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.41
Mean single sequence MFE -30.37
Consensus MFE -20.67
Energy contribution -20.32
Covariance contribution -0.36
Combinations/Pair 1.38
Mean z-score -1.33
Structure conservation index 0.68
SVM decision value 0.10
SVM RNA-class probability 0.583204
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15876388 113 - 23771897
AAUGCAGAAGGAGAACAAUGUCACGGCGGAGAAUUGCCAAUUUGUGGGGCCCUAUCGCCUGGAGAAAACCCUUGGCAAGGGUCAAACGGGUAAGUGCAGGA----AAACUCUUUCCU---
......(((((((.....((.((((((((....))))).((((((..((((((...(((.((.......))..))).))))))..))))))..)))))...----...)))))))..--- ( -37.10)
>DroVir_CAF1 12707 111 - 1
AAUGCAAAAGGAGAACAAUGUAAUGGCGGAAAACUGUCAAUUCGUAGGUCCAUAUCGCUUGGAGAAGACACUUGGCAAGGGUCAAACUGGUAAGUUGCUAA----CAAUAAUUUU-----
...((((..(((...(.(((...((((((....))))))...))).).))).(((((((.((........)).)))..((......))))))..))))...----..........----- ( -18.50)
>DroPse_CAF1 6429 116 - 1
AAUGCAGAAGGAGAACAAUGUCACGGCGGAGAAUUGCCAAUUUGUGGGGCCCUAUCGCCUGGAGAAAACUCUCGGCAAGGGUCAAACGGGUAAGUGCAACA----ACACCAUUUUGUGGA
...((((((((.......((.((((((((....))))).((((((..((((((...(((.((((....)))).))).))))))..))))))..)))))...----...)).))))))... ( -37.02)
>DroGri_CAF1 4890 111 - 1
AAUGCAAAAGGAGAACAAUGUAAUGGCAGAAAACUGCCAAUUUGUGGGUCCAUAUCGUUUGGAGAAGACACUUGGCAAGGGUCAAACAGGUAACCAAAUAC----CAAUAAUUAA-----
..(((....(((..((((.....((((((....))))))..))))...))).....((((.....)))).....)))...........((((......)))----).........----- ( -23.00)
>DroAna_CAF1 5723 110 - 1
AAUGCAGAAGGAGAACAAUGUUACGGCGGAGAAUUGCCAAUUUGUGGGGCCCUAUCGCCUUGAGAAAACUCUUGGCAAGGGUCAAACGGGUAAGUACUACAACUAAAACU----------
..................(((((((((((....))))).((((((..((((((...(((..(((....)))..))).))))))..))))))..)))..))).........---------- ( -29.60)
>DroPer_CAF1 6473 116 - 1
AAUGCAGAAGGAGAACAAUGUCACGGCGGAGAAUUGCCAAUUUGUGGGGCCCUAUCGCCUGGAGAAAACUCUCGGCAAGGGUCAAACGGGUAAGUGCAAGA----ACACCAUUUUGUGGA
...((((((((.......((.((((((((....))))).((((((..((((((...(((.((((....)))).))).))))))..))))))..)))))...----...)).))))))... ( -37.02)
>consensus
AAUGCAGAAGGAGAACAAUGUCACGGCGGAGAAUUGCCAAUUUGUGGGGCCCUAUCGCCUGGAGAAAACUCUUGGCAAGGGUCAAACGGGUAAGUGCAAAA____AAACAAUUUU_____
.....................((((((((....))))).((((((..((((((...(((..(((......)))))).))))))..))))))..)))........................ (-20.67 = -20.32 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:34 2006