Locus 591

Sequence ID 3L_DroMel_CAF1
Location 1,709,672 – 1,709,785
Length 113
Max. P 0.576422
window901

overview

Window 1

Location 1,709,672 – 1,709,785
Length 113
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 89.65
Mean single sequence MFE -28.12
Consensus MFE -21.42
Energy contribution -22.22
Covariance contribution 0.80
Combinations/Pair 1.19
Mean z-score -1.55
Structure conservation index 0.76
SVM decision value 0.09
SVM RNA-class probability 0.576422
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1709672 113 + 23771897
CCUCCUCCAGUUUCCAUUCAGUGCCCCAGGGCCCACUUCACAAAUAUUCAGAGGUCACAUCUGGGAUUUCUCAAAUUUCAACUCAACAUGGGGCUAAGAGAUAUUGAGAACUU
........................((((((....(((((...........)))))....))))))..((((((((((((..(((.....))).....))))).)))))))... ( -24.00)
>DroSec_CAF1 9697 113 + 1
CCUCCUCCAGUUUCCAUUCAGUGCCCCAGGGCCUACUUUACAAGUGUAUAGAGGUCACCUCUGGGAUUUCUCGAAUUUCAACCCAACAUGGGGCUAAGAGAUAUUGAGAACUU
........................((((((((((.((.(((....))).)))))))....)))))..((((((((((((..(((.....))).....))))).)))))))... ( -30.30)
>DroSim_CAF1 9773 113 + 1
CCUCCUCCAGUUUCCAUUCAGUGCCCCAGGGCCUACUUCACAAGUGUCCAGAGGUCGCCUCUGGAAUUUCUCGAAUUUCAACCCAACAUGGGGCUAAGAGAUAUUGAGAACUU
...................((.(((....))))).......((((.((((((((...))))))))...(((((((((((..(((.....))).....))))).)))))))))) ( -32.30)
>DroEre_CAF1 10120 109 + 1
CCUCCUCCAGUUUCCAUUCAAUGCCCCAGGGC---CUUCAUAAGUAUCCAGAGGUCGCCUAUGGGAUUUCUCAAAUUUCAACCCAACAUGGGGGUAAAAUAUAUUGAGAACU-
........................((((((((---((((...........))))..)))).))))..(((((((((((...(((......)))...))))...)))))))..- ( -23.60)
>DroYak_CAF1 9718 113 + 1
CCUCCUCCAGUUUCCAUUCAAUGCCCCAGGGCAUACUUCCUAAGUAUCCAGAGGUCGCCUAUGUGAUUUCUCGAAUUUCAACCCAACAUUGGGGUAAAAGAUAUUGAGAACUU
........((((..((.((..((((((((((.(((((.....)))))))(((((((((....))))))))).................))))))))...))...))..)))). ( -30.40)
>consensus
CCUCCUCCAGUUUCCAUUCAGUGCCCCAGGGCCUACUUCACAAGUAUCCAGAGGUCGCCUCUGGGAUUUCUCGAAUUUCAACCCAACAUGGGGCUAAGAGAUAUUGAGAACUU
......................(((....)))..............((((((((...))))))))..((((((((((((..(((......)))....))))).)))))))... (-21.42 = -22.22 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:04 2006