| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,871,222 – 15,871,321 |
| Length | 99 |
| Max. P | 0.696330 |
| Location | 15,871,222 – 15,871,321 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.11 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -19.09 |
| Energy contribution | -19.07 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15871222 99 - 23771897 GAACGCGAUUUGCUCGCUGGGCUGUUUCAAGGAGAAGGAGAAACUCAUCCAGGAACUGCUCAGUUCAAGGUGAAU-UUAAAUGUCUUUAAUACUUUCU----UU ((((((((.....))))(((((.(((((..(((..((......))..))).))))).)))))))))((((((...-(((((....)))))))))))..----.. ( -26.40) >DroVir_CAF1 790 94 - 1 AAAUGCCAUAUGCUCACUGGGCUGUUUUAAGGAGAAAGAUAAACUGUUGCAGGAACUGCUGAGUGCCAGGUAUUGCCUAAAUA----------UCCUUAAAUUA ...........(((.....)))...((((((((.........(((...((((...))))..)))...(((.....))).....----------))))))))... ( -17.80) >DroSec_CAF1 16214 94 - 1 GAACGCGAUUUGCUCGCUGGGCUGUUUCAAGGAGAAGGAGAAACUCAUCCAGGAGCUGCUCAGUUCAAGGUGAAU-UCGAAUG-----AAUACUUUAU----UG ((((((((.....))))(((((.(((((..(((..((......))..))).))))).)))))))))(((((..((-((....)-----))))))))..----.. ( -27.60) >DroEre_CAF1 9394 99 - 1 GAACGCGAUUUGCUCGCUGGGCUGUUUCAAGGAGAAGGAAAAACUCAUCCAGGAGCUGCUCAGUGCAAGGUGGGU-UUGAAAGUCCUGAAUAUUUUAC----UA ((((.((.(((((..(((((((.(((((..(((..((......))..))).))))).)))))))))))).)).))-))....................----.. ( -30.20) >DroYak_CAF1 19349 99 - 1 GAACGCGAUUUGCUCGCUGGGCUGUUUCAAGGAGAAGGAAAAACUUAUCCAGGAGCUGCUCAGUGCUAGGUGAGU-UUGAAGGUCUUUAAUAUUUUAU----UA ((...(((((..((((((((((.(((((..(((.(((......))).))).))))).))))))))...))..)).-)))....)).............----.. ( -27.80) >DroAna_CAF1 807 97 - 1 GAAUGCCAUUUGUUCGCUGGGAUGUUUCAAGGAGAAGGACAAGCUCAUCCAGGAGCUGUUGAGUGCGAGGUGGGU-UUUCAA------AAUAUUUUUUAAAUUG (((.(((.(((((((.((..((....))..)).))..((((.((((......))))))))....)))))...)))-.)))..------................ ( -20.30) >consensus GAACGCGAUUUGCUCGCUGGGCUGUUUCAAGGAGAAGGAAAAACUCAUCCAGGAGCUGCUCAGUGCAAGGUGAGU_UUGAAUG_____AAUAUUUUAU____UA .......(((((((((((((((.(((((..(((..((......))..))).))))).))))))))...)))))))............................. (-19.09 = -19.07 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:33 2006