Locus 5908

Sequence ID 3L_DroMel_CAF1
Location 15,870,457 – 15,870,550
Length 93
Max. P 0.825416
window9418

overview

Window 8

Location 15,870,457 – 15,870,550
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -42.88
Consensus MFE -39.55
Energy contribution -38.83
Covariance contribution -0.72
Combinations/Pair 1.21
Mean z-score -1.23
Structure conservation index 0.92
SVM decision value 0.70
SVM RNA-class probability 0.825416
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15870457 93 - 23771897
UCGAGGCGAUUGCGGCAUACCGCCGGGCAGUCCGGGCGGCAACUCGAGCGGAUCCACUUCCGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
....((((...(((((...(((((.((....)).)))))......(((((((......)))).))))))))(((((...)))))))))..... ( -42.50)
>DroSec_CAF1 15450 93 - 1
UCGAGGCGAUUGCGGCAUACCGCCGGGCAGUCCGGGCGGCAACUCGAGCGGAUCCACUUCCGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
....((((...(((((...(((((.((....)).)))))......(((((((......)))).))))))))(((((...)))))))))..... ( -42.50)
>DroSim_CAF1 87 93 - 1
UCGAGGCGAGUGCGGCAUACCGCCGGGCAGUCCGGGCGGCAACUCGAGCGGAUCCACUUCCGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
....((((...(((((...(((((.((....)).)))))......(((((((......)))).))))))))(((((...)))))))))..... ( -42.50)
>DroEre_CAF1 8637 93 - 1
GCGAGGCGAUUGCGGCAUACCGCCGGGCAGUCCGGGUGGAAACUCGAGCGGAUCCACCUCUGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
((((((((((((((((.....)))..)))))).(((((((..(......)..)))))))..))))))).((.((..(......)..)).)).. ( -43.80)
>DroYak_CAF1 18584 93 - 1
GCGAGGCGAUUGCGGCAUUCCGCCGGGCAGUCCGGGCGGCAACUCGAGCGGAUCCACUUCUGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
((((((((...(.((...(((((((((..(((.....)))..)))).))))).)).)...)))))))).((.((..(......)..)).)).. ( -40.30)
>DroAna_CAF1 51 93 - 1
GCGAGGGGAUUGCGGUAUGCCGCCGGGCAGUCCGGGCGGCAACUCCAGUGGCUCCACGGCCGCCUCGCCGUCGGUGCACCAUCGUGCCAACUC
((((((..((((.(((.(((((((.((....)).)))))))))).))))((((....)))).)))))).((.((..(......)..)).)).. ( -45.70)
>consensus
GCGAGGCGAUUGCGGCAUACCGCCGGGCAGUCCGGGCGGCAACUCGAGCGGAUCCACUUCCGCCUCGCCGUCGGUGCACCACCGUGCCAACUC
....((((...(((((...(((((.((....)).)))))......(((((((......)))).))))))))(((((...)))))))))..... (-39.55 = -38.83 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:31 2006