| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,869,431 – 15,869,530 |
| Length | 99 |
| Max. P | 0.851093 |
| Location | 15,869,431 – 15,869,530 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.46 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -15.45 |
| Energy contribution | -14.02 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15869431 99 + 23771897 UAUUGAUUACCUGAUAGCAGCGUAAAUGUCAAAGCAAACAACAUAUCCGCUAUGUCACCUUGUUUGCAAAUGGCACUGAUGUCAACCUGA--A---------AUUAGUCA-------- ......(((((((....))).))))..((((..((((((((((((.....))))).....)))))))...))))((((((.((.....))--.---------))))))..-------- ( -21.70) >DroPse_CAF1 4504 108 + 1 GAUUGCUUACCCGAUAGCAGCGUAAAUGUUAAGGCAAACAGCAUAUCUGCUAUGUCACCUUGCUUGCAAAUGGCACUGAUGUCGACCUAA--A-A-------AAGGCACAAGAAAGUA ...(((((...(((((.(((.((...(((..((((((...(((((.....)))))....)))))))))....)).))).))))).(((..--.-.-------.))).......))))) ( -22.40) >DroWil_CAF1 42578 101 + 1 UUUUCCUUACCAGAUAGUAGUGUAAAUGUUAAAGCAAAUAACAUAUCGGCUAUAUCACCUUGUUUACAAAUGGCACUAAUAUCCACCUAA--A-CAAA----AUUAAA---------- ............((((.((((((..((((((.......))))))...((........)).............)))))).)))).......--.-....----......---------- ( -13.10) >DroYak_CAF1 9861 99 + 1 UAUUGAUUACCUGACAGCAGCGUGAAUGUCAAAGCAAACAGCAUAUCUGCUAUGUCACCUUGCUUACAAAUGGCGCUGAUGUCGACCUGA--A---------AUUAUACA-------- ...........(((((.((((((.(.(((..((((((...(((((.....)))))....)))))))))..).)))))).)))))......--.---------........-------- ( -23.90) >DroAna_CAF1 36227 101 + 1 UAUUGUUUACCUGAUAGGAGCGUAAAUGUCAGAGCAAACAACAUGUCUGCUAUGUCACCUUGCUUGCAAAUGGCACUAAUGUCGACCUAAAAA---------AUUGAACA-------- ...((((((.....((((.((((((.((.((.((((.((.....)).)))).)).))..))))..))...(((((....))))).))))....---------..))))))-------- ( -20.20) >DroMoj_CAF1 78347 112 + 1 UAUUACUUACCUGAUAGCAGUGUGAAUGUUAAGGCGAAUAGCAUAUCCGCUAUGUCGCCUUGCUUGCAUAUGGGACUGAUGUCAACCUAU--UGCAAAGCAAAUUUAUU----AAGCG ......(((((((....))).))))..(((((((((((((((......))))).)))))))(((((((.(((((..((....)).)))))--))).)))).........----.))). ( -33.10) >consensus UAUUGCUUACCUGAUAGCAGCGUAAAUGUCAAAGCAAACAACAUAUCUGCUAUGUCACCUUGCUUGCAAAUGGCACUGAUGUCGACCUAA__A_________AUUAAACA________ ...........(((((.(((.((...(((..((((((...(((((.....)))))....)))))))))....)).))).))))).................................. (-15.45 = -14.02 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:31 2006