Locus 5906

Sequence ID	3L_DroMel_CAF1
Location	15,857,401 – 15,857,515
Length	114
Max. P	0.573409

overview

Window 6

Location	15,857,401 – 15,857,515
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	96.35
Mean single sequence MFE	-31.60
Consensus MFE	-29.34
Energy contribution	-29.65
Covariance contribution	0.31
Combinations/Pair	1.04
Mean z-score	-1.53
Structure conservation index	0.93
SVM decision value	0.08
SVM RNA-class probability	0.573409
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15857401 114 + 23771897
AUAAAUUAGCCAAGUUGCCAGCUUUGGACGUGAUGCUCGUCCAGUUAUGACAACAAAAGGAUGCGCCAACGCGAAAGCAGAAAGGAUACACCGAGGGGCAGCAAAACAGAGCCA
........((...((((.((...(((((((.......)))))))...)).)))).......(((.((...((....)).....((.....))..)).)))))............ ( -31.60)
>DroSim_CAF1 66215 114 + 1
AUAAAUUAGCCAAGUUGCCAGCUUUGGACGUGAUGCUCGUCCAGUUAUGACAACAAAAGGAUGCGCCAACGCGAAAGCAGAAAGGAUACACCGAGGGGCAGCAAAACAGAGCCA
........((...((((.((...(((((((.......)))))))...)).)))).......(((.((...((....)).....((.....))..)).)))))............ ( -31.60)
>DroEre_CAF1 64395 113 + 1
AUAAAUUAGCCAAGUUGCCAGCUGUGGUCGUGAUGCUCGUCCAGUUAUGACAACAAAA-GAUGCGCCAACGCGAAAGCAGAAAGGAUACACCGAGGGGCAGCAAAAUAGAGCCU
.............((((((..((((..(((((..((.((((..(((.....)))....-)))).))...)))))..))))...((.....))....))))))............ ( -28.90)
>DroYak_CAF1 106017 114 + 1
AUAAAUUAGCCAAGUUGCCAGCUUCGGCCGUGAUGCUCGUCCGGUUAUGACAACAAAAGGAUGCGCCAACGCGAAAGCAGAAAGGAUACACCGAGGGGCAGCAAAAUAGAGCCU
.............((((((..((((((((((...((.(((((.(((.....)))....))))).))..))((....)).....)).....))))))))))))............ ( -34.30)
>consensus
AUAAAUUAGCCAAGUUGCCAGCUUUGGACGUGAUGCUCGUCCAGUUAUGACAACAAAAGGAUGCGCCAACGCGAAAGCAGAAAGGAUACACCGAGGGGCAGCAAAACAGAGCCA
.............((((((..((((((..((...((.(((((.(((.....)))....))))).))..))((....))............))))))))))))............ (-29.34 = -29.65 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:29 2006