| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,854,490 – 15,854,583 |
| Length | 93 |
| Max. P | 0.946861 |
| Location | 15,854,490 – 15,854,583 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.05 |
| Mean single sequence MFE | -18.21 |
| Consensus MFE | -16.36 |
| Energy contribution | -15.92 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15854490 93 + 23771897 AAUCGGCUAAUGUAUGCAAGAGAGCGGCGGAUGGAAAAAGAA-AAAAAAAAAUAGGGGAUGUUAAGGAUGUCGAUGCUGUGCAUGGCCAAAAAG ....(((((.(((((((......))((((..(....).....-..............((((((...))))))..))))))))))))))...... ( -16.10) >DroSim_CAF1 63289 94 + 1 AAUCGGCUAAUGUAUGCAAGAGUGCGGCGGAUGGAAAAAAAAGAAAAAAAAAUAGGGGAUGUUAAGGAUGUCGAUGCUGUACAUGGCCAAAAAG ....(((((.((....))...((((((((..(....)....................((((((...))))))..)))))))).)))))...... ( -18.60) >DroEre_CAF1 61292 88 + 1 AAUCGGCUAAUGUAUGCAAGAGUGCGGCGGAUGAAAAAUGA-----AAAAAAU-UGUGAUGUUAAGGACGUCGAUGCUGUGCAUGGCCAAAAAG ....(((((.((....))...(..(((((.......(((..-----.....))-).(((((((...))))))).)))))..).)))))...... ( -20.60) >DroYak_CAF1 102917 89 + 1 AAUCGGCUAAUGUAUGCAAGAGUAUGGCGGAUGAAGAACGA-----AAAAAAUGUGGGAUGUUAAGGAUGUCGAUGCUGUGCAUGGCCAAAAAG ....((((.....(((((..(((((((((..(....((((.-----.............))))..)..)))).))))).)))))))))...... ( -17.54) >consensus AAUCGGCUAAUGUAUGCAAGAGUGCGGCGGAUGAAAAAAGA_____AAAAAAUAGGGGAUGUUAAGGAUGUCGAUGCUGUGCAUGGCCAAAAAG ....(((((.((....))...((((((((..(.....)...................((((((...))))))..)))))))).)))))...... (-16.36 = -15.92 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:23 2006