| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,703,791 – 1,703,881 |
| Length | 90 |
| Max. P | 0.990354 |
| Location | 1,703,791 – 1,703,881 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -28.41 |
| Energy contribution | -28.57 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.990354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1703791 90 - 23771897 UAUCGGUCACUAAUCCC--CACCACCAAAACGGGAGCUUCCGGGAGCGGAACUUCUUCCGGCUCCUGGGUUUCCCGUGGCUAGCAAGCGAAA-------- ....(((..........--.)))......(((((((..(((((((((((((....)))).))))))))).))))))).(((....)))....-------- ( -34.30) >DroSec_CAF1 3907 90 - 1 UUUCGGUCACUAAUUCC--AACCACCAAAACGGGAGCUUCCGGGGGCGGAACUUCUUCCGGCUCCAGGGUUUCCCGUGGCUAGCAAGCAAAA-------- ....(((..........--.)))......(((((((..(((((((.(((((....))))).)))).))).))))))).(((....)))....-------- ( -31.10) >DroSim_CAF1 3961 90 - 1 CUUCGGUCACUAAUUCC--CUCCACCAAAACGGGAGGUUCCGGGAGCGGAACUUCUUCCGGCUCCUGGGUUUCCCGUGGCUAGCAAGCAAAA-------- ....((((((......(--((((.........))))).(((((((((((((....)))).)))))))))......))))))...........-------- ( -34.40) >DroEre_CAF1 3901 100 - 1 UUUCGGUCACUAAUUCCUCCACCACCAAAGCGGGAGGAUCCGGGAGCAAUACUUCGUCCGGCUCCUGGGUUUCUCGUGGCUAGCAAGCAAAAGCAAUCAA ....((((((....((((((..(......)..))))))(((((((((...((...))...)))))))))......)))))).....((....))...... ( -34.30) >DroYak_CAF1 3874 90 - 1 UUUCGGUCACUAAUUCC--CUCCACCAAAGCGGGAGCAUCCGGGAGCGGAACUUCGUCCGGCUCCUGGGUUUCUCGUGGCUAGCAAGCAAAA-------- ....((((((...((((--(.(.......).))))).(((((((((((((......))).)))))))))).....))))))...........-------- ( -32.80) >consensus UUUCGGUCACUAAUUCC__CACCACCAAAACGGGAGCUUCCGGGAGCGGAACUUCUUCCGGCUCCUGGGUUUCCCGUGGCUAGCAAGCAAAA________ ....(((................)))...((((((...((((((((((((......))).)))))))))..)))))).(((....)))............ (-28.41 = -28.57 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006