Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 207,589 – 207,680 |
Length | 91 |
Max. P | 0.668445 |
Location | 207,589 – 207,680 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 75.73 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -13.30 |
Energy contribution | -13.72 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.29 |
Mean z-score | -1.96 |
Structure conservation index | 0.46 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 207589 91 + 23771897 GUAGAU-UUGCGAGCAGAGCUAUAAAAGGGC----GCGCAGACAACGCGCUCUACCCAGUUAAAAAGAGUGCGUUGUGUAGAACAGUCAUAAGCAG ...(((-(((((.((....((.....)).))----.)))).((((((((((((............)))))))))))).......))))........ ( -26.40) >DroSec_CAF1 6431 91 + 1 CCAGCU-GUGCGGGCAGAGCUAUAAAAGGGC----GCGCAGGCAACGCGCUCUAUCCAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG ...(((-(((((.((....((.....)).))----.)))..((((((((((((............)))))))))))).....)))))......... ( -30.50) >DroSim_CAF1 6406 91 + 1 CCAGCU-GUGCGGGCAGAGCUAUAAAAGGGC----GCGCAGCCAACGCGCUCUAUCCAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG ...(((-((((((((...))).........)----)))))))(((((((((((............))))))))))).................... ( -29.00) >DroEre_CAF1 6964 92 + 1 GCAGCUGGUGCGGGCAGCGCUAUAAAAGGGC----GCGCAGUCGACGCGCUCAACACAGUUGAAAAGUGUGCGUUGAACAGAACAGUCGUAGGCAG .((((((((((.....)))).......((((----((((....).)))))))....))))))....((.(((((((.......))).)))).)).. ( -32.90) >DroYak_CAF1 6414 86 + 1 ------GGUGAGGGCAACGCUAUAUAAGGGC----GCGCAGUUAACGCGCUCUACACAGUAGAAAAGUGUGCGUUGAAAAGAACAGACGUAAGCAG ------.((.....((((((......(((((----(((.......))))))))((((.........))))))))))......)).(.(....)).. ( -25.00) >DroPer_CAF1 5847 90 + 1 UUCGCUGCUGCGAGCAAAACUAUAAAAAGGUUGCUGCGCAG----CUCGCUCGUUACAGUUAUCUGGUGUGCGUUGCAGCGAUACGUCAUAG--UG .((((((((((((((((..((......)).))))).)))))----)..((.(((..(((....)))....)))..)))))))..........--.. ( -30.20) >consensus CCAGCU_GUGCGGGCAGAGCUAUAAAAGGGC____GCGCAGUCAACGCGCUCUACACAGUUGAAAAGAGUGCGUUGUAAAGAACAGUCAUAAGCAG ........((((......(((.......))).....)))).(((((((((.(..............).)))))))))................... (-13.30 = -13.72 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:15 2006