| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,845,699 – 15,845,905 |
| Length | 206 |
| Max. P | 0.658481 |
| Location | 15,845,699 – 15,845,812 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 98.24 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.74 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15845699 113 + 23771897 CACAAAAUUGAAAUUCCC-CCACUUAUUUAAUACACUUAAGCCAUCAACUUGGACUUGGGGCACAUGGCCACACGUACUAAAUCACUUACGGCCAAGUUCAAUCAGACGAGUUA ...........(((((..-...((((...........))))........(((((((((((((.....)))...((((..........)))).))))))))))......))))). ( -21.10) >DroSec_CAF1 52828 113 + 1 CACAAAAUUGAAAUUCCC-CCACUUAUUUAAUACACUUAAGCCAUCAACUUGGACUUGGCGCACAUGGCCACACGUACUAAAUCACUUACGGCCAAGUUCAAUCAGACGAGUUA ...........(((((..-...((((...........))))........(((((((((((((.....))....((((..........)))))))))))))))......))))). ( -20.80) >DroSim_CAF1 54053 113 + 1 CACAAAAUUGAAAUUCCC-CCACUUAUUUAAUACACUUAAGCCAUCAACUUGGACUUGGCGCACAUGGCCACACGUACUAAAUCACUUACGGCCAAGUUCAAUCAGACGAGUUA ...........(((((..-...((((...........))))........(((((((((((((.....))....((((..........)))))))))))))))......))))). ( -20.80) >DroEre_CAF1 51940 114 + 1 CACAAAAUUGAAAUUCCCACCACUUGUUUAAUACACUUAAGCCAUCAACUUGGACUUGGUGCACAUGGCCACACGUACUAAAUCACUUACGCCCAAGUUCAAUCAGACGAGUUA .....................((((((((.........(((.......)))((((((((.((...((....)).(((..........)))))))))))))....)))))))).. ( -19.30) >DroYak_CAF1 94341 113 + 1 CACAAAAUUGAAAUUCCC-CCACUUAUUUAAUACACUUAAGCCAUCAACUUGGACUUGGUGCACAUGGCCACACGUACUAAAUCACUUACGGCCAAGUUCAAUCAGACGAGUUA ......((((((......-..............((((.((((((......))).)))))))....(((((....((........))....)))))..))))))........... ( -18.70) >consensus CACAAAAUUGAAAUUCCC_CCACUUAUUUAAUACACUUAAGCCAUCAACUUGGACUUGGCGCACAUGGCCACACGUACUAAAUCACUUACGGCCAAGUUCAAUCAGACGAGUUA ...........(((((......((((...........))))........(((((((((((((.....))....((((..........)))))))))))))))......))))). (-17.58 = -17.74 + 0.16)
| Location | 15,845,812 – 15,845,905 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -22.38 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15845812 93 - 23771897 -------------------A-------AAGUCCGAAGUCCAGCCGGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU -------------------(-------(..((((.(((((....)))))....((.(((((-.((((((((((((........))))))))))))..)))))))......))))..)).. ( -30.10) >DroPse_CAF1 52123 103 - 1 ACUGAGACAGGA-------A-------CAGGG-AGAGGGCAG--GGACUAAUGGGUCAGUUCUGGUUGGCUGUAGACCGAGAGUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU .(((........-------.-------)))..-....(((((--((.(((...((((((......)))))).))).)).(((((((....)))))))..))))).....((....))... ( -22.70) >DroSim_CAF1 54166 93 - 1 -------------------A-------AAGUCCGAAGUCCAGUCGGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU -------------------(-------(..((((.(((((....)))))....((.(((((-.((((((((((((........))))))))))))..)))))))......))))..)).. ( -30.10) >DroEre_CAF1 52054 93 - 1 -------------------A-------AAGUCCGAGGUUCAGCCGGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACUUUGCGGAAGUUAU -------------------(-------(..((((.(((.((((((.((((...((((((..-...)))))).))))....((((((....))))))))))))..)))...))))..)).. ( -29.00) >DroYak_CAF1 94454 107 - 1 ------------GAACCCCAAAGUCCGAAGUCCGAAGUUCAGCCGGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU ------------.......((..((((.((((((.........))))))....((.(((((-.((((((((((((........))))))))))))..)))))))......))))..)).. ( -32.00) >DroPer_CAF1 53888 103 - 1 ACUGAGACAGAA-------A-------CAGGG-GGAGGGCAG--GGACUAAUGGGUCAGUUCUGGUUGGCUGUAGACCGAGAGUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU .(((........-------.-------)))..-....(((((--((.(((...((((((......)))))).))).)).(((((((....)))))))..))))).....((....))... ( -22.70) >consensus ___________________A_______AAGUCCGAAGUCCAGCCGGGCUAAUAGGUCAGUU_UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAU ............................((((((.........))))))....((.(((((..((((((((((((........))))))))))))..))))))).....((....))... (-22.38 = -23.27 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:18 2006