Locus 5896

Sequence ID 3L_DroMel_CAF1
Location 15,842,571 – 15,842,686
Length 115
Max. P 0.987962
window9398

overview

Window 8

Location 15,842,571 – 15,842,686
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 90.32
Mean single sequence MFE -45.04
Consensus MFE -35.02
Energy contribution -35.02
Covariance contribution -0.00
Combinations/Pair 1.15
Mean z-score -2.81
Structure conservation index 0.78
SVM decision value 2.10
SVM RNA-class probability 0.987962
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15842571 115 + 23771897
ACCAAAGCACAUAAUGAGCAUAAUGGGCGUGUUGAGAGGGAUGGCUGCUGCUGUUGGGGGGGUCACAUUGCCCGUAUGCCAUGUGGCCUACCCCUAGGCAACACCACCUACCCCC
..(((.((.(((.((....)).))).))...)))...(((.(((.((.((((...(((((((((((((.((......)).))))))))).))))..)))).))))))))...... ( -42.10)
>DroSec_CAF1 49672 108 + 1
ACCAAAGCACAUAAUGAGCAUAAUGGGCGUGUUGAGAGGGGUGGCUGCUGCCAGUAGG-GGGUCACAUUGCCCCUAUGCCAUGUGGCCUACCCCUAGGCAACAUC------CCCC
......((.(.....).)).....(((.((((((..(((((((((..(.....(((((-((.........))))))).....)..))).))))))...)))))).------))). ( -47.20)
>DroSim_CAF1 50889 107 + 1
ACCAAAGCACAUAAUG-GCAUAAUGGGCGUGUUGAGAGGGGUGGCUGCUGCUGCUGGG-GGGUCACAUUGCCCCUAUGCCAUGUGGCCUACCCCUAGGCAACAUC------CCCC
......((........-)).....(((.((((((..(((((((((..(....((..((-((((......))))))..))...)..))).))))))...)))))).------))). ( -47.50)
>DroEre_CAF1 48828 105 + 1
ACCAAAGCACAUAAUGAGCAUAAUGGGCGUGUUGAGAGGGGUGACUGCUGU---UUGG-GGGUCACAUUGCCCCUAUGCCAUGUGGCAUGCCCCUGUGCAACAUC------CCCC
......((.(.....).)).....(((.(((((((.((((((.........---..((-((((......))))))(((((....))))))))))).).)))))).------))). ( -41.40)
>DroYak_CAF1 91075 104 + 1
ACCAAAGCACAUAAUGAGCAUAAUGGGCGUGUUGAGAGGGGUGGCUGCUGU---UUGG-GGGUCACAUUGCCCCUAUGCCAUGUGGCCUACCCCUAGGCAACAUC------CC-C
......((.(.....).)).....(((.((((((..(((((((((..(.((---.(((-((((......))))))).))...)..))).))))))...)))))).------))-) ( -47.00)
>consensus
ACCAAAGCACAUAAUGAGCAUAAUGGGCGUGUUGAGAGGGGUGGCUGCUGC___UGGG_GGGUCACAUUGCCCCUAUGCCAUGUGGCCUACCCCUAGGCAACAUC______CCCC
......((.(((.((....)).))).))((((((..(((((((((....))).......(((((((((.((......)).)))))))))))))))...))))))........... (-35.02 = -35.02 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:12 2006