Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,840,729 – 15,840,836 |
Length | 107 |
Max. P | 0.734734 |
Location | 15,840,729 – 15,840,836 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -20.00 |
Energy contribution | -20.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15840729 107 - 23771897 CUCUAAGUGCACCACCA---CCGGCUCCACAAGCCAUCCAAAUUCCCAUUCACACUAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC ......(((((.(....---..((((.....)))).....................................((((.(((.........))).))))).)))))...... ( -20.20) >DroSec_CAF1 47844 110 - 1 CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC ......(((((.(......(((((((......(.....)((((....)))).....))))))).........((((.(((.........))).))))).)))))...... ( -23.10) >DroSim_CAF1 49053 110 - 1 CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC ......(((((.(......(((((((......(.....)((((....)))).....))))))).........((((.(((.........))).))))).)))))...... ( -23.10) >consensus CUCUAAGUGCACCACCACCACUGGCUCCACAAGCCAUCCGAAUUCCCAUUCACACCAGCCAGUUAAACCGCAGUUCCUGCUCUAUCUCCGCACGAGCGUUGCACAUUUGC ......(((((.(.........((((.....)))).....................................((((.(((.........))).))))).)))))...... (-20.00 = -20.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:07 2006