Locus 5893

Sequence ID 3L_DroMel_CAF1
Location 15,839,426 – 15,839,532
Length 106
Max. P 0.949064
window9392

overview

Window 2

Location 15,839,426 – 15,839,532
Length 106
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 92.97
Mean single sequence MFE -30.60
Consensus MFE -24.80
Energy contribution -24.80
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -2.02
Structure conservation index 0.81
SVM decision value 1.39
SVM RNA-class probability 0.949064
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15839426 106 + 23771897
UUAACGUAGCCUAUAUAGCCACGU----AUAUAC------GAAGAUUGUGGGCGGC-AAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACAAAUUAUGAAU
....((((((((((.(((((.(((----....))------)....((.(((.....-...))).)).))))).)))))....((((((.((((....)))).)))))).)))))... ( -31.90)
>DroSec_CAF1 46544 107 + 1
UUAACGUAGCCUAUAUAGCCGCGU----AUAUAC------AAAGAUUGUGGGCGGCCAAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACGAAUUAUGAAU
....((((((((.....(((((.(----(((...------......)))).)))))....(((...........))))))).((((((.((((....)))).))))))..))))... ( -32.30)
>DroSim_CAF1 47754 111 + 1
UUAACGUAGCCUAUAUAGCCGCGUACAUAUAUAC------AAAGAUUGUGGGCGGCCAAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACGAAUUAUGAAU
....((((((((.....(((((.((((.......------......)))).)))))....(((...........))))))).((((((.((((....)))).))))))..))))... ( -33.82)
>DroEre_CAF1 45679 113 + 1
UUAACGUAUCCUACAUAGCCACGU----AUAUAUACUUGUAAAGAUUGUGGGCGGCCAAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACGAAUUAUGAAU
....(((((((((..(((((...(----(((......))))....((.(((.........))).)).)))))..)))))...((((((.((((....)))).))))))..))))... ( -27.70)
>DroYak_CAF1 87975 107 + 1
UUAACGUAUCCUAUAUAGCCACGU----AUAUAU------AAAGAUUGGGGGCGGCCAAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACGAAUUAUGAAU
....((((((((((.(((((.(..----......------...).((((.((...))...))))...))))).))))))...((((((.((((....)))).))))))..))))... ( -27.30)
>consensus
UUAACGUAGCCUAUAUAGCCACGU____AUAUAC______AAAGAUUGUGGGCGGCCAAACCAGAAAGGCUAAAUGGGGGCAUUGUUGUGUUGAAGGCAGCUCAACGAAUUAUGAAU
....((((.(((((.(((((..((........))...........((.(((.........))).)).))))).)))))....((((((.((((....)))).))))))..))))... (-24.80 = -24.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:06 2006