Locus 5892

Sequence ID 3L_DroMel_CAF1
Location 15,838,954 – 15,839,046
Length 92
Max. P 0.975707
window9391

overview

Window 1

Location 15,838,954 – 15,839,046
Length 92
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 81.79
Mean single sequence MFE -16.20
Consensus MFE -12.29
Energy contribution -12.85
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.76
SVM decision value 1.76
SVM RNA-class probability 0.975707
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15838954 92 - 23771897
AAAAUUGAGA-----------------U---CGCAACUUCAUUUAACUAAAUUGGAAUUACUCCAAUUACCAACGAACUCUUUCCCACUGA-ACAUCAGCUGUGAAUUGCAAU
..........-----------------.---.((((.(((((.......(((((((.....)))))))...................(((.-....)))..)))))))))... ( -15.40)
>DroSec_CAF1 46083 96 - 1
AAAAUUAAGA-----------------UCAUCGCAGCUUCAUUUAACCAAAUUGGAAUUAAUCCAAUUACCAACGAACUCUUUCCCACGGAAACAUCAGCUGUGAAUUGCAAU
..........-----------------...((((((((...........(((((((.....)))))))............(((((...)))))....))))))))........ ( -19.70)
>DroSim_CAF1 47280 96 - 1
AAAAUUAAGA-----------------UCAUCGCAACUUCAUUUAACCAAAUUGGAAUUACUCCAAUUACCAACGAACUCUUUCCCACUGAAACAUCAGCUGCGAAUUGCAAU
..........-----------------.....((((.............(((((((.....))))))).............(((.((((((....)))).)).)))))))... ( -15.10)
>DroEre_CAF1 45209 112 - 1
UCAAUCAGGAAUAAAUAUCAACGUCAAUCGAGGCAACUUCAUUUAACUAAAUUGGACUUACUCCAAUUACCAACGAACUCUUUUCCACUGA-ACAUCACUUGUGAAUUGCAAU
.......((((......((......(((.(((....))).)))......(((((((.....)))))))......))......)))).....-...(((....)))........ ( -14.60)
>consensus
AAAAUUAAGA_________________UCAUCGCAACUUCAUUUAACCAAAUUGGAAUUACUCCAAUUACCAACGAACUCUUUCCCACUGA_ACAUCAGCUGUGAAUUGCAAU
................................((((.(((((.......(((((((.....)))))))...................((((....))))..)))))))))... (-12.29 = -12.85 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:05 2006