| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,837,330 – 15,837,445 |
| Length | 115 |
| Max. P | 0.795509 |
| Location | 15,837,330 – 15,837,445 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -19.32 |
| Energy contribution | -21.57 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15837330 115 - 23771897 CCGUUCUCAAUGGAUGUCGUU---UUAUUCUUCAGUUUUAUUUAGCCCAAAAUCGGAAAUUGAAUUUCUAAGGUCGGUAUUCAUUUCAC-UUGGAGCAAUGGCCGUU-UAGGUCUUUGCA (((.....(((((((..((((---(((...(((((((((((((......))))..)))))))))....))))).))..)))))))....-.))).((((.((((...-..)))).)))). ( -28.90) >DroSec_CAF1 44519 114 - 1 C-GUUCUCAAUGGAUGUCGUU---UUAUUCUUCAGUUUUAUUUAGCGCAAAAGCGGAAAUUGAAUUUCUGAGCUCGGCAUUCAUUUCAC-UUGGAGCAAUGGCCGUU-UAAGUCUUUGCA .-......(((((((((((.(---(((...(((((((((.....((......)).)))))))))....))))..)))))))))))....-.....((((.(((....-...))).)))). ( -27.60) >DroSim_CAF1 45677 117 - 1 C-AUUCUCAAUGGAUGUCGUUUAUUUAUUUUUCAGUUUUAUUUAGCGCAAAAGCGGAAAUUGAAUUUCUGAGCUCGGCAUUCAUUUAAG-UUGGAGCAAUGGCCGUU-UAGGUCUUUGCA (-(.....(((((((((((....((.....(((((((((.....((......)).))))))))).....))...)))))))))))....-.))..((((.((((...-..)))).)))). ( -33.20) >DroEre_CAF1 43613 114 - 1 C-AUUCUCAAUGGAUGUCGUU---UUACUCUGCAGUUUUAUUUGGCGCAAAAGCGGAAAUUGAAUUUUUGAGGUUGGUAUUCAUUUCAC-CAGGAGCAAUGGCCGUU-UAGGUCUUUGCA .-.((((.(((((((..((..---...(((...(((((..(((.((......)).)))...)))))...)))..))..)))))))....-.))))((((.((((...-..)))).)))). ( -27.30) >DroYak_CAF1 85874 113 - 1 C-GUGCUCAAUGGAUGUCGUU---UUAUUUUUCAGUUUUAUUUAGUGCAAAAGCGGAAAUUGAAUUUUUGAGGUCGGUAUUCAUUUCAC-U-GGAGCAAUGGCCGUU-UAGGUCUUUGCA .-(((...(((((((..((((---(((...(((((((((.....((......)).)))))))))....))))).))..))))))).)))-.-...((((.((((...-..)))).)))). ( -31.40) >DroPer_CAF1 45989 94 - 1 G-AAUA-------------------------UCAGUGUUAUUUAGAGCUAAAAAGGAAAUUGAAUUUGUGCGGUUCGAAUUUAUUUCGUUUUGGUGCAUUGACCGCAGCAGGUCCUUGCA .-....-------------------------...............(((((((..(((((.(((((((.......)))))))))))).)))))))(((..((((......))))..))). ( -23.10) >consensus C_AUUCUCAAUGGAUGUCGUU___UUAUUCUUCAGUUUUAUUUAGCGCAAAAGCGGAAAUUGAAUUUCUGAGGUCGGUAUUCAUUUCAC_UUGGAGCAAUGGCCGUU_UAGGUCUUUGCA ........(((((((((((...........(((((((((.(((......)))...)))))))))..........)))))))))))..........((((.((((......)))).)))). (-19.32 = -21.57 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:04 2006